Job Description P0AAS5 Confidence 6.62% Date Thu Jan 5 11:13:41 GMT 2012 Rank 33 Aligned Residues 67 % Identity 16% Template d2eiaa2 SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 2.70

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		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.											.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.									.
Predicted Secondary structure																					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		Q	P	L	A	A	A	W	M	Q	R	A	E	E	T	G	L	F	G	P	.	.	.	.	.	L	A	L	A	A	S	D	P	L	P	A	E	L	R	Q	F	R	H	.	.	.	.	.	.	.	.	.	.	C	F	Q	A	A	L	N	G	V	K	T	D	W	R	H	W	L	G	K	.	.	.	.	.	.	.	.	G
Query Conservation																					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	R	G	Y	T	T	W	V	N	T	I	Q	T	N	G	L	L	N	E	A	S	Q	N	L	F	G	I	L	S	V	D	C	T	S	E	E	M	N	A	F	L	D	V	V	P	G	Q	A	G	Q	K	Q	I	L	L	D	A	I	D	K	I	A	D	D	W	D	N	R	H	P	L	P	N	A	P	L	V	A	P	P
Template Known Secondary structure			T	T											T		S	S	S												T	T												S	S				T																					S			T	T			S	S			S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		163	.	.	.	.		.	.	170	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		P	G	L	T	P	.	S	H	D	D	T
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		Q	G	P	I	P	M	T	A	R	F	I
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions