Return to main results Retrieve Phyre Job Id

Job DescriptionP16869
Confidence100.00%DateThu Jan 5 11:35:50 GMT 2012
Rank9Aligned Residues622
% Identity16%Templated1kmoa_
SCOP infoTransmembrane beta-barrels Porins Ligand-gated protein channel
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63..... .70.........80.........90.........100.........110........ .120...... ..
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Query Sequence  TSTSAG. . . . TKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVMENTLGISKSQADSDRA. . . . . LYYSRGFQ. . . . . ID
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Template Sequence  ALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRS
Template Known Secondary structure 






SSTT

T
SS
GGGTGGGT

STTSTT


SBTTB
STTS


TTS

GGG
SS
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   129130.........140.... .....150.........160.........170.........180.........190..... ....200..
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Query Sequence  NYMVDGIPTYFESRWN. . LGDALSDMALFERVEVVRGATGLMTGTGNPSAAINMVRKHATSREFKGDVS. . . . AEYGSWN
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Template Sequence  TVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQN
Template Known Secondary structure  TT
SSSTTT



SS



GGG
SS
TTTS
SSGGG




SS

TTSS

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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   203......210.........220.........230.........240.........250.........260.........270.........280..
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Query Sequence  KERYVADLQSPLTEDGKIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWGGLPRWN
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Template Sequence  NPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYD
Template Known Secondary structure 


TTS

SSSS


SSSS



B
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   283......290.........300.........310.........320.........330.........340.........350.........360..
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Query Sequence  TDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQQFADTWQATLNATHSEVEFDSKMMYVDAYVNKADGMLVGPYSNYGP
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Template Sequence  ADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQG. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SS

S
TT

SSTTT............................
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   321........330.........340.........350.........360.........370..
 
   363......370.........380.........390.........400.........410.........420.........430.........440..
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Query Sequence  GFDYVGGTGWNSGKRKVDALDLFADGSYELFGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQ
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Template Sequence  . . . . . KRITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAH
Template Known Secondary structure  .....T

TTTTSSS


TTS
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   373......380.........390.........400.........410.........420.........430.........440.......
 
   443......450.........460.........470.........480.........490.........500.........510.........520..
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Query Sequence  SLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQNDR
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Template Sequence  AWYLDDKIDIGNWTITPGMRFEHIESYQ. . . . . . NNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYS
Template Known Secondary structure  TT......TTT

TT


GG
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   448.450.........460.........470..... ....480.........490.........500.........510.........520.
 
   523 ......530.........540.........550.........560.........570.........580.........590........
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Query Sequence  D. . . . SSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDNVAQSTGTPIPGSNGETAYKAVDGTVSKGVEFELNG
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Template Sequence  QIGKAVQSGNVEPEKARTWELGTRYDD. . GALTAEMGLFLINFNNQYDSNQTNDTVTA. RGKTRHTGLETQARYDLGTLT
Template Known Secondary structure  GTS




..SSSS

SSS

TT
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GGGT
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   522.......530.........540........ .550.........560.........570....... ..580.........590........
 
   599600.........610.........620 .........630.........640.........650.........660...... ...670
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Query Sequence  AITDNWQLTFGATRYIAEDNEG. . . . NAVNPNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPY. . . . GTFR
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Template Conservation              
             
  
   
         
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Template Sequence  PTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYK. . . PGNWTFNLNSDFQSSQFADNANTVKESADGST
Template Known Secondary structure  GGGTT
SSSTTTT
B
TT

S
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TT

B
SSTT


S

TTSSS
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   599600.........610.........620.........630.........640... ......650.........660.........670.....
 
   671........680........ .690.........700.........710. ........720.........
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Query Sequence  AEQGSYALVDLFTRYQVT. . . KNFSLQGNVNNLFDKTYDTNVEG. . . . SIVYGTPRNFSITGTYQF
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Template Sequence  GRIPGFMLWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF
Template Known Secondary structure  S
B



TTTT

STT




SSTT



S
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   676...680.........690.........700.........710.........720.........730.........740.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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