Job Description P16869 Confidence 25.24% Date Thu Jan 5 11:35:50 GMT 2012 Rank 43 Aligned Residues 179 % Identity 11% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		533	.	.	.	.	.	.	540	.	.	.	.	.		.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.			.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																				.	.
Query SS confidence															.																																																				.	.
Query Sequence		T	G	N	N	Y	E	L	G	L	K	S	D	W	.	M	N	S	R	L	T	T	T	L	A	I	F	R	I	E	Q	D	N	V	A	Q	S	T	G	T	P	I	P	G	S	N	G	E	T	A	Y	K	A	V	D	G	T	V	S	K	G	V	E	F	E	L	.	.	N	G	A	I	T	D	N	W	Q	L	T	F	G
Query Conservation															.																																																				.	.
Alig confidence															.																																																				.	.
Template Conservation
Template Sequence		K	V	K	G	L	H	V	G	G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W
Template Known Secondary structure																	S	S	S	B																				S	S	S																				B					G	G	G
Template Predicted Secondary structure
Template SS confidence
		812	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.					.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		A	T	R	Y	I	A	E	D	N	E	G	N	A	V	N	P	N	L	P	R	T	T	V	K	.	.	.	.	M	F	T	S	Y	R	L	P	V	M	P	E	L	T	V	G	G	G	V	N	W	Q	N	R	V	Y	T	D	T	V	T	P	Y	G	T	F	R	A	E	Q	G	S	Y	A	L	V	D	L	F	T	R	Y
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.
Template Sequence		R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	.	.	.	.	.	.	.	.	H	G	R	V	E	L	G	A	G	V	D	A
Template Known Secondary structure											S	S	S																										T	T	S																					.	.	.	.	.	.	.	.	B
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.
Template SS confidence
		892	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.									.	.	.	.	.	.	.	.	960	.	.	.
		686	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	T	K	N	F	S	L	Q	G	N	V	N	N	L	F	D	K	T	Y	D	T	N	V	E	G	S	I	V	Y	G	T	P	R	N	F	S	I	T	G	T	Y	Q	F
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	S	.	.	.	.	.	.	.	.	.	.	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure				G	G	G	B												S	S							.	.	.	.	.	.	.	.	.	.							B
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		977	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.											.	.	.	.	.	.	.	.	1010

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions