Job Description P16869 Confidence 5.27% Date Thu Jan 5 11:35:50 GMT 2012 Rank 53 Aligned Residues 247 % Identity 10% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.					.	.	.	540
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		D	P	L	H	L	I	L	G	A	R	Y	T	N	W	R	V	D	T	L	T	Y	S	M	E	K	N	H	T	T	P	Y	A	G	L	V	F	D	I	N	D	N	W	S	T	Y	A	S	Y	T	S	I	F	Q	P	Q	N	D	R	D	S	S	G	K	Y	L	A	P	I	T	G	N	N	.	.	.	.	Y	E	L	G
Query Conservation																																																																										.	.	.	.
Alig confidence																																																																										.	.	.	.
Template Conservation
Template Sequence		S	Q	T	E	V	K	V	G	E	W	M	P	V	L	P	I	L	R	S	D	D	G	R	S	L	P	Q	T	F	R	G	G	Q	I	T	S	K	E	I	A	G	L	T	L	Y	G	G	Q	F	R	A	N	S	P	R	D	D	S	S	M	S	D	M	S	M	F	G	K	A	A	F	T	S	D	R	F	N	F	Q	G
Template Known Secondary structure		T	T													T	T						S	S	S	S														S	T	T														T	T		S	S		B					T	T							S
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560			.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.															.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure																						.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	S	D	W	M	N	S	R	L	T	T	T	L	A	I	F	R	I	E	.	.	Q	D	N	V	A	Q	S	T	G	T	P	I	P	G	S	N	G	E	T	A	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	D	G	T	V	S	K	G	V	E	F	E	L	N	G	A	I	T	D	N	W
Query Conservation																						.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		A	E	Y	A	F	N	D	K	R	T	Q	I	A	L	W	N	A	Q	L	K	D	I	Y	S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	.	.	.	G	G	N
Template Known Secondary structure							T	T	T	T											T	T	T															S	S																T	T		T	T																	.	.	.	T	T
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.																.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	T	F	G	A	T	R	Y	I	A	E	D	N	E	G	N	A	V	N	P	N	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	T	V	K	M	F	T	S	Y	R	L	P	V	M	P	E	L	T	V	G	G	G	V	N	W	Q	N	R	V	Y	T	D	T	V	T	P	Y	G	T	F
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	S	D	G	K
Template Known Secondary structure													S	S					B	T	T				T	T	S	T	T			S	S					S	T	T												T	T	T	T	T		T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.					.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		R	A	E	Q	G	S	Y	A	L	V	D	L	F	T	R	Y	Q	V	T	.	.	.	.	K	N	F	S	L	Q	G	N	V	N	N	L	F	D	K	T	Y	D	T	N	V	E	G	S	I	V	Y	G	T	P	R	N	F	S	I	T	G	T	Y	Q	F
Query Conservation																					.	.	.	.
Alig confidence					.	.	.	.	.	.											.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Sequence		E	W	G	.	.	.	.	.	.	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	E	F	D	.	.	.	.	.	.	.	.	.	E	N	R	L	I	I	S	Y	P	L
Template Known Secondary structure					.	.	.	.	.	.											S	S	S	S	T	T													S	S		S					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		369	370	.							.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.										.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions