Job Description P16869 Confidence 99.20% Date Thu Jan 5 11:35:50 GMT 2012 Rank 16 Aligned Residues 249 % Identity 16% Template c3dwoX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue Resolution 2.20 Å

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		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.																														.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	D	W	S	P	Q	S	L	A	Q	D	D	T	T	H	M	K	S	L	Y	A	A	T	R	V	T	L	A	D	P	L	H	L	I	L	G	A	R	Y	T	N	W	R	V	D	T	L	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	N	W	K	G	R	D	F	A	V	D	T	K	I	E	T	I	G	L	T	G	S	L	S	F	K	V	N	D	N	F	S	L	G	A	G	V	I	I	Q	R	T	S	G	F	V	S	Q	N	L	D	L	Y	A	S	A	A	N	S	P	G	M	G	G	I	P	F	P	A	S	N	S	S	A	L	M	R	V	K
Template Known Secondary structure			T	T	S	T	T	T	T	T		S																	S	S	S	S																												T	S	T	T	T		S	S				T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.																																520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	K	N	H	T	T	P	Y	A	G	L	V	F	D	I	N	D	N	W	S	T	Y	A	S	Y	T	S	I	F	Q	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	R	D	S	S	G	K	Y	L	A	P	I	T	G	N
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	N	T	S	P	G	F	F	A	G	A	V	W	K	P	T	D	R	D	T	L	G	F	A	Y	H	A	K	I	R	N	K	L	K	G	H	Y	N	L	Y	D	H	D	G	G	L	T	E	G	A	I	E	G	G	T	P	G	L	A	Y	P	G	L	D	L	R	M	G	A	S	A	S	A	R	L	D	I	P	A
Template Known Secondary structure																	S	S	S	S											B														S	T	T								T	T						S	T	T					S										B
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	E	L	G	L	K	S	D	W	M	N	S	R	L	T	T	T	L	A	I	F	R	I	E	Q	D	N	V	A	Q	S	T	G	T	P	I	P	G	S	N	G	E	T	A	Y	K	A	V	D	G	T	V	S	K	G	V	E	F	E	L	N	G	A	I	T	D	N	W	Q	L	T	F	G	A	T	R	Y	I	A
Query Conservation
Alig confidence												.																							.	.	.
Template Conservation												.																							.	.	.
Template Sequence		Y	A	S	L	D	W	V	H	Q	F	.	N	D	R	L	S	L	G	A	S	A	T	W	T	E	W	S	S	F	Q	D	L	T	.	.	.	L	K	S	H	G	N	T	I	V	S	I	P	Y	T	Y	R	N	T	W	T	L	A	V	G	G	D	Y	K	V	T	D	Q	W	T	M	R	A	G	V	A	Y	D	Q	T
Template Known Secondary structure												.	S	S	S												G	G	G						.	.	.				T	T																								S	S	S	S
Template Predicted Secondary structure												.																							.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		616	.	.	.	620			.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.								.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
Predicted Secondary structure							.	.																																																.	.	.	.	.	.	.
Query SS confidence							.	.																																																.	.	.	.	.	.	.
Query Sequence		E	D	N	E	G	.	.	N	A	V	N	P	N	L	P	R	T	T	V	K	M	F	T	S	Y	R	L	P	V	M	P	E	L	T	V	G	G	G	V	N	W	Q	N	R	V	Y	T	D	T	V	T	P	Y	G	.	.	.	.	.	.	.	T	F	R	A	E	Q	G	S	Y	A	L	V	D	L	F	T	R	Y	Q
Query Conservation							.	.																																																.	.	.	.	.	.	.
Alig confidence							.	.																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	H	N	A	T	R	D	P	R	I	P	D	G	D	R	Y	F	A	S	L	G	A	G	Y	R	F	Q	S	M	P	E	L	S	I	D	A	A	Y	S	R	Q	F	V	K	E	V	P	L	K	T	V	N	Q	D	R	L	G	G	G	R	L	D	G	R	A	T	S	K	G	Q	V	F	S	L	S	A	T	Y	D
Template Known Secondary structure		S			T	T	T			S	S	S																	S	S	S	S	S																				B			G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		687	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		443	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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