Job Description P16869 Confidence 11.49% Date Thu Jan 5 11:35:50 GMT 2012 Rank 47 Aligned Residues 171 % Identity 15% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	Y	E	L	G	L	K	S	D	W	M	N	S	R	L	T	T	T	L	A	I	F	R	I	E	Q	D	N	V	A	Q	S	T	G	T	P	I	P	G	S	N	G	E	T	A	Y	K	A	V	D	G	T	V	S	K	G	V	E	F	E	L	N	G	A	I	T	D	N	W	Q	L	T	F	G	A	T	R	Y	I
Query Conservation
Alig confidence													.	.																																		.	.	.	.	.																		.
Template Conservation													.	.																																		.	.	.	.	.																		.
Template Sequence		E	S	Y	H	A	G	L	K	Y	E	N	.	.	A	G	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D	A	E	R	V	A	V	N	T	A	N	A	H	P	.	.	.	.	.	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	D	.	L	Y	V	S	V	A	G	Q	Y	E	A
Template Known Secondary structure													.	.	T	T																	T	T	S		B			T	T		T	T				.	.	.	.	.																T	T	.
Template Predicted Secondary structure													.	.																																		.	.	.	.	.																		.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		A	E	D	N	E	G	N	A	V	N	P	N	L	P	R	T	T	.	V	K	M	F	T	S	Y	R	L	P	V	M	P	E	L	T	V	G	G	G	V	N	W	Q	N	R	V	Y	T	D	T	V	T	P	Y	G	T	F	R	A	E	Q	G	S	Y	A	L	V	D	L	F	T	R	Y	Q	V	T	K	N	F	S	L
Query Conservation																			.
Alig confidence																			.									.	.	.																										.	.	.	.	.	.
Template Conservation																												.	.	.																										.	.	.	.	.	.
Template Sequence		A	K	N	N	E	V	G	S	I	K	G	K	K	H	E	Q	T	Q	V	A	A	T	A	A	Y	R	.	.	.	F	G	N	V	T	P	R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	K	D	A	N	.	.	.	.	.	.	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T	S	A
Template Known Secondary structure						S	S	S	T	T	T	T																.	.	.	B	T	T																T	T				G	G	.	.	.	.	.	.	G													S	S	S	S
Template Predicted Secondary structure																												.	.	.																										.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.							.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		694	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	N	V	N	N	L	F	D	K	T	Y	D	T	N	V	E	G	S	I	V	Y	G	T	P	R	N	F	S	I	T	G	T	Y	Q	F
Query Conservation
Alig confidence																						.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.
Template Sequence		L	V	S	A	G	W	L	K	Q	G	K	G	A	G	K	V	E	Q	T	A	.	.	.	.	.	.	.	S	M	V	G	L	R	H	K	F
Template Known Secondary structure											S	S	T	T	S							.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.								.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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