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Job DescriptionP16869
Confidence43.98%DateThu Jan 5 11:35:50 GMT 2012
Rank39Aligned Residues241
% Identity13%Templatec2y0kA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   465....470.........480.........490.........500.........510.........520....... ..530.........540.
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Query Sequence  DPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQNDRDSSGK. . . YLAPITGNNYELGL
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Template Sequence  SNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGG
Template Known Secondary structure  TT



TT




SSSS



SSS
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   101........110.........120.........130.........140.........150.........160.........170.........180
 
   542.......550.........560.........570.........580..... ....590.........600......
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Query Sequence  KSDWMNSRLTTTLAIFRIEQDNVAQSTGTPIPGSNGETAYKAVD. . . . . . . . . . . . . . . GTVSKGVEFELNGAITDNWQL
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Template Sequence  DYRLTPA. . . LTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFSLRL. . . GAHAV
Template Known Secondary structure  SSSS...TTT



TTS


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   181...... ..190.........200.........210.........220.........230.........240......... 250....
 
   607..610.........620 .........630.........640.. .......650.........660.........670
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Query Sequence  TFGATRYIAEDNEG. . . . . . . . . . . . . . NAVNPNLPRTTVKMFTSYRLPV. . MPELTVGGGVNWQNRVYTDTVTPYGTFR
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Template Sequence  AAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWE
Template Known Secondary structure  SSS



BTTS



TT

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   257..260.........270.........280.........290.........300.........310.........320.........330......
 
   671........680........ .690.........700.........710.........720.........
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Query Sequence  AEQGSYALVDLFTRYQVT. . . . KNFSLQGNVNNLFDKTYDTNVEGSIVYGTPRNFSITGTYQF
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Template Sequence  . . . . . . . . RNTDLGYVVQSGPLKNLGVKW. . . . . . . . RNATVRSN. . FANDLDENRLILSYSL
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SSTTTT
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   337..340.........350....... ..360..... ....370.........380.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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