Job Description P16869 Confidence 14.84% Date Thu Jan 5 11:35:50 GMT 2012 Rank 46 Aligned Residues 136 % Identity 11% Template c2o4vA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane Resolution 1.94 Å

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		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640																						.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	G	T	V	S	K	G	V	E	F	E	L	N	G	A	I	T	D	N	W	Q	L	T	F	G	A	T	R	Y	I	A	E	D	N	E	G	N	A	V	N	P	N	L	P	R	T	T	V	K	M	F	T	S	Y	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																				.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																				.	.	.
Template Sequence		W	K	D	D	S	V	W	G	L	E	G	A	W	A	L	.	.	.	G	A	F	S	A	Q	A	E	Y	L	R	R	T	V	K	A	E	R	D	.	.	.	R	E	D	L	K	A	S	G	Y	Y	A	Q	L	A	Y	T	L	T	G	E	P	R	L	Y	K	L	D	G	A	K	F	D	T	I	K	P	E	N	K	E
Template Known Secondary structure																	.	.	.	T	T																T	T	.	.	.																	T	T								T	T	T	T								S		T	T
Template Predicted Secondary structure																	.	.	.																				.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	E	L	T	V	G	G	G	V	N	W	Q	N	R	V	Y	T	D	T	V	T	P	Y	G	T	F	R	A	E	Q	G	S	Y	A	L	V	D	L	F	T	R	Y	Q	V	T	K	N	F	S	L	Q	G	N	V	N	N	L	F	D	K	T	Y	D	T	N	V	E	G	S	I	V	Y	G	T	P	R	N	F	S
Query Conservation
Alig confidence																																																																										.	.	.	.
Template Conservation																																																																										.	.	.	.
Template Sequence		I	G	A	W	E	L	F	Y	R	Y	D	S	I	K	V	E	D	D	N	I	V	V	D	S	A	T	R	E	V	G	D	A	K	G	K	T	H	T	L	G	V	N	W	Y	A	N	E	A	V	K	V	S	A	N	Y	V	K	A	K	T	D	K	I	S	N	A	N	G	D	D	S	G	.	.	.	.	D	G	L	V
Template Known Secondary structure		T																	T	T			S			S	S	B		S	S																S	S	S														S	B			T	T						.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400					.	.	.	.
		723	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	G	T	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	R	L	Q	Y	V	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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