Return to main results Retrieve Phyre Job Id

Job DescriptionP37646
Confidence74.18%DateThu Jan 5 11:56:18 GMT 2012
Rank45Aligned Residues112
% Identity13%Templatec3f6cB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   130.........140.........150.........160.........170.........180.........190.........200.........
Predicted Secondary structure 















Query SS confidence 















































































Query Sequence  LRFELVEHIRLPKDSTFASMCEFGPLWLDDFGTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYC
Query Conservation 
 


 
         
  
   
 






        
  
  
 



                
  
   
   
Alig confidence 





















































.....














..



Template Conservation 







       
   
   
  

        
         
 

 
  .....
    
         ..    
Template Sequence  LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVD. . . . . IPGVNGIQVLETLRK. . RQYS
Template Known Secondary structure 


TTSSSTT

STT.....
SSS
..TT

Template Predicted Secondary structure 

















.....




..



Template SS confidence 















































































   1........10.........20.........30.........40.........50.... .....60......... 70...
 
   210.........220.........230.........240.........250..
Predicted Secondary structure 














Query SS confidence 










































Query Sequence  RGVIVEGVETPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAV
Query Conservation    


 



      
   

   

     
 
  

    
Alig confidence 























....














Template Conservation    

  
             
   .... 
 

     
   
Template Sequence  GIIIIVSAKDHFYGKHCADAGANG. . . . FVSKKEGMNNIIAAI
Template Known Secondary structure  S



STTT
S....GGG
T
Template Predicted Secondary structure 








....



Template SS confidence 










































   74.....80.........90....... ..100.........110..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions