 |
Job Description | P37646 | Confidence | 51.99% | Date | Thu Jan 5 11:56:18 GMT 2012 |
Rank | 96 | Aligned Residues | 72 |
% Identity | 21% | Template | c1qhoA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:alpha-amylase; |
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex
|
Resolution | 1.70 Å |
|
 |
  |   |
138 | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | |
|
. | . | . | . | . | . | 160 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |  |  |  |  |  |
|
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | R | L | P | K | D | S | T | F | A | S | M | C | E | F | G | . |
. |
P | L | W | L | D | D | F | . |
. |
. |
. |
. |
. |
G | T | G | M | A | N | F | S | A | L | S | E | V | R | Y | D | Y | I | K | I | A | R | E | L | F | V | M | L | R | Q | S | P | E | G | R | T | L | F | S | Q | L | L | H | L | M | N | R | Y | C |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
| . | . |   |
|
|
|
|
|
| . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |
|
|
|
|
|   |   |
|
|
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |   |   | . | . | . | . | . | . | . | . |
|
|   |   |
|
|
|   |
|
|   |   |   |
|   |   |
|
Template Sequence |   |
D | L | E | G | V | R | Q | K | L | P | Y | L | K | Q | L | G | V | T | T | I | W | L | S | P | V | L | D | N | L | D | T | L | A | G | T | D | N | T | G | Y | H | G | Y | W | T | R | D | F | K | Q | I | E | E | H | F | . |
. |
. |
. |
. |
. |
. |
. |
G | N | W | T | T | F | D | T | L | V | N | D | A | H | Q | N | G |
Template Known Secondary structure |   |
|  |  |  |  |  |  | T |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
|
|
|  |  |  |
| S | S |
| S | S | T | T |
|
|
| T | T | S |
| S |  |  |  |  |  |  |  |
| T | T | T | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
  |
  |   |
210 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
R | G | V | I | V | E | G | V |
Query Conservation |   |
  |   |
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|   |
|
Template Sequence |   |
I | K | V | I | V | D | F | V |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
122 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|