Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Sequence |   |
M | L | T | S | F | K | L | H | S | L | K | P | Y | T | L | K | S | S | M | I | L | E | I | I | T | Y | I | L | C | F | F | S | M | I | I | A | F | V | D | N | T | F | S | I | K | I | Y | N | I | T | A | I | V | C | L | L | S | L | I | L |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Sequence |   |
R | G | R | Q | E | N | Y | N | I | K | N | L | I | L | P | L | S | I | F | L | I | G | L | L | D | L | I | W | Y | S | A | F | K | V | D | N | S | P | F | R | A | T | Y | H | S | Y | L | N | T | A | K | I | F | I | F | G | S | F | I | V |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Sequence |   |
F | L | T | L | T | S | Q | L | K | S | K | K | E | S | V | L | Y | T | L | Y | S | L | S | F | L | I | A | G | Y | A | M | Y | I | N | S | I | H | E | N | D | R | I | S | F | G | V | G | T | A | T | G | A | A | Y | S | T | M | L | I | G |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Sequence |   |
I | V | S | G | V | A | I | L | Y | T | K | K | N | H | P | F | L | F | L | L | N | S | C | A | V | L | Y | V | L | A | L | T | Q | T | R | A | T | L | L | L | F | P | I | I | C | V | A | A | L | I | A | Y | Y | N | K | S | P | K | K | F |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Sequence |   |
T | S | S | I | V | L | L | I | A | I | L | A | S | I | V | I | I | F | N | K | P | I | Q | N | R | Y | N | E | A | L | N | D | L | N | S | Y | T | N | A | N | S | V | T | S | L | G | A | R | L | A | M | Y | E | I | G | L | N | I | F | I |
Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
Sequence |   |
K | S | P | F | S | F | R | S | A | E | S | R | A | E | S | M | N | L | L | V | A | E | H | N | R | L | R | G | A | L | E | F | S | N | V | H | L | H | N | E | I | I | E | A | G | S | L | K | G | L | M | G | I | F | S | T | L | F | L | Y |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . |
Sequence |   |
F | S | L | F | Y | I | A | Y | K | K | R | A | L | G | L | L | I | L | T | L | G | I | V | G | I | G | L | S | D | V | I | I | W | A | R | S | I | P | I | I | I | I | S | A | I | V | L | L | L | V | I | N | N | R | N | N | T | I | N |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |
Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 2d07 chain A
Region: 304 - 350 Aligned: 33 Modelled: 33 Confidence: 9.3% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: crystal structure of sumo-3-modified thymine-dna glycosylase
Phyre2
2 |
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PDB 1mug chain A
Region: 304 - 350 Aligned: 33 Modelled: 33 Confidence: 8.9% Identity: 12% Fold: Uracil-DNA glycosylase-like Superfamily: Uracil-DNA glycosylase-like Family: Mug-like
Phyre2
3 |
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PDB 1a92 chain B
Region: 301 - 306 Aligned: 6 Modelled: 6 Confidence: 8.4% Identity: 17% PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen;
PDBTitle: oligomerization domain of hepatitis delta antigen
Phyre2
4 |
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PDB 2rba chain B
Region: 304 - 350 Aligned: 33 Modelled: 33 Confidence: 7.6% Identity: 12% PDB header:hydrolase/dna Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna
Phyre2
5 |
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PDB 1wra chain A domain 1
Region: 306 - 350 Aligned: 45 Modelled: 45 Confidence: 6.8% Identity: 7% Fold: Metallo-hydrolase/oxidoreductase Superfamily: Metallo-hydrolase/oxidoreductase Family: Pce catalytic domain-like
Phyre2
6 |
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PDB 2knc chain A
Region: 344 - 373 Aligned: 30 Modelled: 30 Confidence: 6.4% Identity: 17% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
Phyre2
|
Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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