Job Description P60723 Confidence 100.00% Date Thu Jan 5 12:07:06 GMT 2012 Rank 11 Aligned Residues 193 % Identity 25% Template c4a1aC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:rpl4; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Resolution 3.52 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.
Query Sequence		K	D	A	Q	S	A	L	T	V	S	E	T	T	F	G	R	D	F	N	E	A	L	V	H	Q	V	V	V	A	Y	A	A	G	A	R	Q	G	T	R	A	Q	K	T	R	A	E	V	T	G	S	G	K	K	P	W	R	Q	K	G	T	G	R	A	R	S	.	.	.	.	.	.	.	.	G	S	I	K	S	P	I
Query Conservation																																																																			.	.	.	.	.	.	.	.
Alig confidence												.																																							.																.	.	.	.	.	.	.	.
Template Conservation												.																																							.
Template Sequence		K	Q	T	A	T	K	L	T	L	P	.	A	V	F	T	A	P	I	R	T	D	I	V	H	K	V	F	T	D	L	N	K	N	R	K	Q	A	S	G	V	K	I	S	T	R	G	T	A	G	.	M	G	H	S	A	E	S	W	G	T	G	R	A	V	A	R	I	P	R	V	G	G	S	G	T	H	R	S	G	Q
Template Known Secondary structure												.	G	G	G	G	S																	T	T								B		S	S		B	T	T	.			S							G	G	G	S	S		S	S						S	S	S	T	T	T	T
Template Predicted Secondary structure												.																																							.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		78							.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.															.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.												.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.												.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	.	.	.	.	.	.	R	S	G	G	V	T	F	A	A	R	P	.	Q	D	H	S	Q	K	V	N	K	K	M	Y	R	G	A	L	K	S	I	L	S	E	L	V	R	Q	D	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	V	E	K	F	S	V	E	A	P	K	T	K	L	L	A	Q
Query Conservation			.	.	.	.	.	.												.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.												.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	F	G	N	Q	C	R	K	G	R	M	F	A	P	L	K	T	Y	R	R	V	H	R	R	V	N	V	N	Q	K	R	H	A	V	A	A	A	L	A	A	S	A	L	V	P	L	V	F	A	R	G	H	R	I	S	N	V	Q	E	L	P	Y	V	F	D	D	S	V	E	S	Y	E	K	T	K	Q	A	V	A
Template Known Secondary structure		B		S	S	T	T	S	T	T				S	S				S																									T								T	T				T	T			S	S	S					T	T	G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		137	.	.	140	.	.	.																													.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Query Sequence		K	L	K	D	M	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	V	L	I	I	T	G	E	L	D	E	N	L	F	L	A	A	R	N	L	H	K	V	D	V	R	D	A	T	G	I	D	P	V	S	L	I	A	F	D	K	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Template Conservation
Template Sequence		F	L	K	R	V	G	A	Y	D	D	V	L	R	V	A	E	T	K	A	L	R	A	G	Q	G	K	L	R	N	R	R	Y	K	L	R	R	G	P	L	V	V	Y	G	N	E	K	S	T	L	T	R	A	L	R	N	I	P	G	V	D	V	C	N	V	N	R	L	N	L	L	Q	L	A	P	G	G	H	V	G	R
Template Known Secondary structure							T	T																G	G	G	G	G	G	T																T	T		S						T	T	S	T	T						T	T	S							S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
			186	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	V	V	M	T	A	D	A	V	K	Q	V	E	E	M	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		F	I	I	W	T	E	S	A	F	K	K	L	N	E	I	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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