Job Description P60723 Confidence 100.00% Date Thu Jan 5 12:07:06 GMT 2012 Rank 5 Aligned Residues 197 % Identity 23% Template c3jywD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4(b); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution Resolution 8.90 Å

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		2	.	.	.	.	.	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.									.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		E	L	V	L	K	D	A	Q	S	A	.	.	.	.	.	L	T	V	S	E	T	T	F	G	R	D	F	N	E	A	L	V	H	Q	V	V	V	A	Y	A	A	G	A	R	Q	.	.	.	.	.	.	.	.	G	T	R	A	Q	K	T	R	A	E	V	T	G	S	G	K	K	P	W	R	Q	K	G	T	G	R	A
Query Conservation												.	.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.					.																										.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		Q	V	T	V	H	S	L	T	G	E	A	T	A	N	A	L	P	L	P	.	A	V	F	S	A	P	I	R	P	D	I	V	H	T	V	F	T	S	V	N	K	N	K	R	Q	A	Y	A	V	S	E	K	A	G	H	Q	T	S	A	E	S	W	G	T	G	R	A	V	A	R	I	P	R	V	G	G	G	G	T	G
Template Known Secondary structure								T	T	T		S		S							.	G	G	G	G	S																	T	T	S							S	S	T	T		S	S							T	T	S	S	S		S	S	S	S	S	S	S	S		S	S
Template Predicted Secondary structure																					.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		69	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.															.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure					.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	S	G	.	S	I	K	S	P	I	W	R	S	G	G	V	T	F	A	A	R	P	.	Q	D	H	S	Q	K	V	N	K	K	M	Y	R	G	A	L	K	S	I	L	S	E	L	V	R	Q	D	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	V	E	K	F	S	V	E	A	P	K	T	K
Query Conservation					.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	S	G	Q	G	A	F	G	N	M	C	R	G	G	R	M	F	A	P	T	K	T	W	R	K	W	N	V	K	V	N	H	N	E	K	R	Y	A	T	A	S	A	I	A	A	T	A	V	A	S	L	V	L	A	R	G	H	R	V	E	K	I	P	E	I	P	L	V	V	S	T	D	L	E	S	I	Q	K	T	K
Template Known Secondary structure					S	S	S			S	S	S	T	T	S			S	S				S	S	S								S	T	T														S								S				S			S	S		S					T	T	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		133	.	.	.	.	.	.	140	.	.	.																												.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	A	Q	K	L	K	D	M	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	V	L	I	I	T	G	E	L	D	E	N	L	F	L	A	A	R	N	L	H	K	V	D	V	R	D	A	T	G	I	D	P	V	S	L	I	A	F	D	K
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	V	A	A	L	K	A	V	G	A	H	S	D	L	L	K	V	L	K	S	K	K	L	R	A	G	K	G	K	Y	R	N	R	R	W	T	Q	R	R	G	P	L	V	V	Y	A	E	D	N	G	I	V	K	A	L	R	N	V	P	G	V	E	T	A	N	V	A	S	L	N	L	L	Q	L	A	P	G	A	H
Template Known Secondary structure											T			T	T	T	T	T			S						S	T					S	S		S	S						S					S	S	S	S	S			S	T	T	T	S	S	T	T						S	S	S			S	T	T	T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
						186	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	V	V	M	T	A	D	A	V	K	Q	V	E	E	M
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		L	G	R	F	V	I	W	T	E	A	A	F	T	K	L	D	Q	V
Template Known Secondary structure																S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions