Job Description P60723 Confidence 100.00% Date Thu Jan 5 12:07:06 GMT 2012 Rank 10 Aligned Residues 192 % Identity 27% Template c3iz5D_ PDB info PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4 (l4p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.						.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.													.	.	.	.	.
Query SS confidence																																											.	.	.	.	.													.	.	.	.	.
Query Sequence		D	A	Q	S	A	L	T	V	S	E	T	T	F	G	R	D	F	N	E	A	L	V	H	Q	V	V	V	A	Y	A	A	G	A	R	Q	G	T	R	A	Q	K	.	.	.	.	.	T	R	A	E	V	T	G	S	G	K	K	P	.	.	.	.	.	W	R	Q	K	G	T	G	R	A	R	S	G	S	I	K	S	P
Query Conservation																																											.	.	.	.	.													.	.	.	.	.
Alig confidence											.																																.	.	.	.	.													.	.	.	.	.														.
Template Conservation											.																																																																			.
Template Sequence		D	N	S	S	S	L	A	L	A	.	E	V	F	R	A	P	L	R	P	D	V	V	R	F	V	H	R	L	L	S	C	N	K	R	Q	P	Y	A	V	S	R	R	A	G	H	Q	T	S	A	E	S	W	G	T	G	R	A	V	S	R	I	P	R	V	P	G	G	G	T	H	R	A	G	Q	G	A	.	F	G	N
Template Known Secondary structure		S									.	G	G	G	G	S																	T		S					S		T	T	T	T	T		S							S	S	S	S	S		S	S							S	S	S				S			.	S	S	S
Template Predicted Secondary structure											.																																																																			.
Template SS confidence
		21	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.															.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure															.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	W	R	S	G	G	V	T	F	A	A	R	P	.	Q	D	H	S	Q	K	V	N	K	K	M	Y	R	G	A	L	K	S	I	L	S	E	L	V	R	Q	D	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	V	E	K	F	S	V	E	A	P	K	T	K	L	L	A	Q	K	L	K	D	M
Query Conservation															.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	C	R	G	G	R	M	F	A	P	T	K	T	W	R	K	W	H	R	R	V	N	V	H	L	R	R	V	A	V	A	S	A	L	A	A	T	S	V	P	S	L	V	L	A	R	G	H	R	I	E	T	V	P	E	L	P	L	V	I	S	D	S	A	E	S	I	E	K	T	S	Q	A	I	K	I	L	K	Q	V
Template Known Secondary structure		S	S	T	T				S	S	S			S																								T	T									T							S	S	S	S					T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		142	.																													.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query Sequence		A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	V	L	I	I	T	G	E	L	D	E	N	L	F	L	A	A	R	N	L	H	K	V	D	V	R	D	A	T	G	I	D	P	V	S	L	I	A	F	D	K	V	.	.	.	.	V	M	T
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Template Conservation
Template Sequence		G	A	Y	A	D	A	E	K	A	K	D	S	V	G	I	R	P	G	K	G	K	M	R	N	R	R	Y	I	N	R	K	G	P	L	I	V	Y	G	T	E	G	S	K	I	V	K	A	F	R	N	L	P	G	V	D	V	A	N	V	E	R	L	N	L	L	D	L	A	P	G	G	H	L	G	R	F	V	I	W	T
Template Known Secondary structure		T							T	T	S	S							S	G	G	G	G	T	T		S														T	T	T								T	S	T	T						G	G	G							S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	V	K	Q	V	E	E	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	A	F	K	K	L	E	E	V	Y
Template Known Secondary structure						T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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