Job Description P60723 Confidence 100.00% Date Thu Jan 5 12:07:06 GMT 2012 Rank 2 Aligned Residues 200 % Identity 29% Template c3bboG_ PDB info PDB header:ribosome Chain: G: PDB Molecule:ribosomal protein l4; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Resolution 9.40 Å

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		1	.	.	.	.	.	.	.	.	10	.					.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		M	E	L	V	L	K	D	A	Q	S	A	.	.	.	.	L	T	V	S	E	T	T	F	G	R	D	F	N	E	A	L	V	H	Q	V	V	V	A	Y	A	A	G	A	R	Q	G	T	R	A	Q	K	T	R	A	E	V	T	G	S	G	K	K	P	W	R	Q	K	G	T	G	R	A	R	S	G	S	I	K	S	P
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.
Template Conservation
Template Sequence		I	P	L	P	I	L	N	F	S	G	E	K	V	G	E	T	F	L	N	L	K	T	A	P	P	E	K	A	R	A	V	V	H	R	G	L	I	T	H	L	Q	N	K	R	R	G	T	A	S	T	L	T	R	A	E	V	R	G	G	G	R	K	P	Y	P	Q	K	K	T	G	R	A	R	R	G	S	Q	G	S	P
Template Known Secondary structure									S	S	S				S						S	S	S	S	S	S				T	T	T	T	T	T																		S	S	T	T		S	S	S								S	S	S		S		S			S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		I	W	R	S	G	G	V	T	F	A	A	R	P	Q	D	H	S	Q	K	V	N	K	K	M	Y	R	G	A	L	K	S	I	L	S	E	L	V	R	Q	D	R	L	I	V	V	E	K	F	S	V	E	A	P	K	T	K	L	L	A	Q	K	L	K	D	M	A	L	.	.	.	E	D	V	L	I	I	T	G	E	L
Query Conservation																																																																					.	.	.
Alig confidence																																																																					.	.	.
Template Conservation
Template Sequence		L	R	P	G	G	G	V	I	F	G	P	K	P	R	D	W	T	I	K	M	N	K	K	E	R	R	L	A	L	S	T	A	I	A	S	A	V	G	N	S	F	V	V	E	E	F	A	E	N	F	E	K	P	K	T	K	D	F	I	A	A	M	Q	R	W	G	L	D	P	A	E	K	S	L	F	F	L	M	D	L
Template Known Secondary structure		S	S	S	S	S			S	S				S									S																	T	T							G	G	G	T	T			S	S					T	T					S		S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	N	L	F	L	A	A	R	N	L	H	K	V	D	V	R	D	A	T	G	I	D	P	V	S	L	I	A	F	D	K	V	V	M	T	A	D	A	V	K	Q	V	E	E	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	N	V	E	K	S	G	R	N	I	R	T	L	K	L	L	T	P	R	S	L	N	L	F	D	V	L	N	A	E	K	L	V	F	T	E	G	T	I	Q	Y	L	N	Q	R	Y
Template Known Secondary structure		S	S	S			T	T	T	S	S	S	S	S						S	S										S	S						T	T									S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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