Job Description P60723 Confidence 100.00% Date Thu Jan 5 12:07:06 GMT 2012 Rank 7 Aligned Residues 197 % Identity 19% Template c2zkrc_ PDB info PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es5; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		3	.	.	.	.	.	.	10	.					.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.									.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure											.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		L	V	L	K	D	A	Q	S	A	.	.	.	.	L	T	V	S	E	T	T	F	G	R	D	F	N	E	A	L	V	H	Q	V	V	V	A	Y	A	A	G	A	R	Q	.	.	.	.	.	.	.	.	G	T	R	A	Q	K	T	R	A	E	V	T	G	S	G	K	K	P	W	R	Q	K	G	T	G	R	A	R	S
Query Conservation											.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	V	Y	S	E	K	G	E	S	S	G	K	N	V	T	L	P	A	V	F	K	A	P	I	R	P	D	I	V	N	F	V	H	T	N	L	R	K	N	N	R	Q	P	Y	A	V	S	E	L	A	G	H	Q	T	S	A	E	S	W	G	T	G	R	A	V	A	R	I	P	R	V	R	G	G	G	T	H	R	S
Template Known Secondary structure							T	T	S	S						S	S			G	G	G	G	S																	T	T								S		T	T	T		S							S	S	S	S	S			S			B	T	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		71		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.															.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure			.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	.	S	I	K	S	P	I	W	R	S	G	G	V	T	F	A	A	R	P	.	Q	D	H	S	Q	K	V	N	K	K	M	Y	R	G	A	L	K	S	I	L	S	E	L	V	R	Q	D	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	V	E	K	F	S	V	E	A	P	K	T	K	L	L
Query Conservation			.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																			.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	G	A	F	G	N	M	C	R	G	G	R	M	F	A	P	T	K	T	W	R	R	W	H	R	R	V	N	T	T	Q	K	R	Y	A	I	C	S	A	L	A	C	L	S	L	P	A	L	V	M	S	K	G	H	R	I	E	E	V	P	E	L	P	L	V	V	E	D	K	V	E	G	Y	K	K	T	K	E	A
Template Known Secondary structure		S	T	T			T	T	S	T	T					S	S				S	S	S																							T								T	T					S		S			S					G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.																												.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Query Sequence		A	Q	K	L	K	D	M	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	V	L	I	I	T	G	E	L	D	E	N	L	F	L	A	A	R	N	L	H	K	V	D	V	R	D	A	T	G	I	D	P	V	S	L	I	A	F	D	K	.	.
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Template Conservation
Template Sequence		V	L	L	L	K	K	L	K	A	W	N	D	I	K	K	V	Y	A	S	Q	R	M	R	A	G	K	G	K	M	R	N	R	R	R	I	Q	R	R	G	P	C	I	I	Y	N	E	D	N	G	I	I	K	A	F	R	K	H	P	G	I	T	L	L	N	V	S	K	L	N	I	L	K	L	A	P	G	G	H	V	G
Template Known Secondary structure								T	T		T						T	T	S	S					S	S	S	T	T	T	T	T														S	S	S	S								T	S	T	T						G	G	G							S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
				186	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	V	V	M	T	A	D	A	V	K	Q	V	E	E	M
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		R	F	C	I	W	T	E	S	A	F	R	K	L	D	D	L
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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