Job Description P60723 Confidence 100.00% Date Thu Jan 5 12:07:06 GMT 2012 Rank 9 Aligned Residues 170 % Identity 32% Template c2ftcD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:mitochondrial ribosomal protein l4 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Resolution 12.10 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		H	Q	V	V	V	A	Y	A	A	G	A	R	Q	G	T	R	A	Q	K	T	R	A	E	V	T	G	S	G	K	K	P	W	R	Q	K	G	T	G	R	A	R	S	G	S	I	K	S	P	I	W	R	S	G	G	V	T	F	A	A	R	.	P	Q	D	H	S	Q	K	V	N	K	K	M	Y	R	G	A	L	K	S
Query Conservation																																																														.
Alig confidence																																																														.
Template Conservation
Template Sequence		H	Q	V	A	M	W	Q	K	N	F	K	R	I	S	Y	A	K	T	K	T	R	A	E	V	R	G	G	G	R	K	P	W	P	Q	K	G	T	G	R	A	R	H	G	S	I	R	S	P	L	W	R	G	G	G	V	A	H	G	P	R	G	P	T	S	Y	Y	Y	M	L	P	M	K	V	R	A	L	G	L	K	V
Template Known Secondary structure										S	S	S			S							S	T	T	T	S	S	S		S	S		S			S	S	S	S	S		S			S	S		S	S	S	S	S	S	S		S		S														T	T	T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		I	L	S	E	L	V	R	Q	D	R	L	I	V	V	E	K	F	S	V	E	A	P	K	T	K	L	L	A	Q	K	L	K	D	M	A	L	E	D	.	.	.	.	V	L	I	I	T	G	E	L	D	E	N	L	F	L	A	A	R	N	L	H	K	V	D	V	R	D	A	T	G	I	D	P	V	S	L	I	A	F
Query Conservation																																								.	.	.	.
Alig confidence																																								.	.	.	.
Template Conservation
Template Sequence		A	L	T	V	K	L	A	Q	D	D	L	H	I	M	D	S	L	E	L	P	T	G	D	P	Q	Y	L	T	E	L	A	H	Y	R	R	W	G	D	S	V	L	L	V	D	L	T	H	E	E	M	P	Q	S	I	V	E	A	T	S	R	L	K	T	F	N	L	I	P	A	V	G	L	N	V	H	S	M	L	K	H
Template Known Secondary structure		T	T	T	T	T	T	T	S	S									S		S	S													S	S			T	T				B					S	S		S	S	T	T	T	T	T	G	G	G		S	S	S	B			S	S	S									T	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	V	V	M	T	A	D	A	V	K	Q	V	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	L	V	L	T	L	P	T	V	A	F	L	E	D
Template Known Secondary structure								S	S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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