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Job DescriptionP37637
Confidence100.00%DateThu Jan 5 11:56:09 GMT 2012
Rank3Aligned Residues676
% Identity17%Templatec3aqpB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  AGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKD
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Template Sequence  KGGLRIVLEADVENPTLDDLEKARTVLENRIN. . ALGVAEPLIQIQGQKRIVVELPGL. . . . SQADQDRALKLIGQRAVL
Template Known Secondary structure  T


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   40.........50.........60.........70. ........80.........90..... ....100.........110...
 
   165.... 170.........180 .........190.........200.........210.........220.........230.........240.
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Query Sequence  PLSRT. . AGVGSVQLFGS. EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQQLNASIIVQTRLQ
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Template Sequence  EFRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPEDLGPPLLTGADLADARAVFDQFG. . . . . . RPQVSLTFTPE
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TT
B
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   114.....120.........130.........140.........150.........160.........170...... ...180.......
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  TPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASL
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Template Sequence  GAKKFEEVTRQNIGK. . . . RLAIVLDGRVYTAPVIRQAITGGQAVIE. . . . . . . GLSSVEEASEIALVLRSGS. . LPVPL
Template Known Secondary structure  TTTS....


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   188.190.........200.. .......210.........220.........230 .........240......... 250....
 
   322.......330... ......340.........350.........360.........370.........380.........390.........400
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Query Sequence  KTVYPYDTTPFI. EISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVL
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Template Conservation                                
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Template Sequence  KVAEIRAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYG. PHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVL
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   255....260.........270.........280.........290.... .....300.........310.........320.........330...
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  AIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITLISSMLL
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Template Conservation   

  

  
            
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Template Sequence  TLGAAVDGNVLSFERIKEELRAG. KKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGP. . . VRGFAVILAIGVVA
Template Known Secondary structure  TT.

T

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   334.....340.........350...... ...360.........370.........380.........390..... ....400.........
 
   481........490.........500.........510.........520.........530.........540.........550.........560
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Query Sequence  SVFVAMSLTPALCATILKAAPEGGHKPNALFARFNTLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLRTPTS
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Template Conservation 
        
 
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Template Sequence  SVFSNLVFSRHLLERLADRGEIRPPMWLVDPRFNF. . . . . . . . . . . . . . . . . MGPARYVTAATLLLAALAAGVVFAKGFN
Template Known Secondary structure  T












ST.................TTTT

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   410.........420.........430.........440.... .....450.........460.........470..
 
   561........570.........580.........590.........600.........610.........620.........630.........640
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Query Sequence  FLPEEDQGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNNGLAFISLKPWSERVGEEN
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Template Sequence  YSIDFTG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   473......
 
   641........650.........660.........670.........680.........690.........700.........710.........720
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Query Sequence  SVTAIIQRAMIALSSINKAVVFPFNLPAVAELGTASGFDMELLDNGNLGHEKLTQARNELLSLAAQSPNQVTGVRPNGLE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   721........730.........740.........750.........760.........770.........780.........790.........800
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Query Sequence  DTPMFKVNVNAAKAEAMGVALSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRMLPDNINQWYVRNASGTMAPLS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GTAYTLRAEPNVEVETLRRFLEEKGFPGKEAVITQVY
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TT

TTTS
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   480.........490.........500.........510......
 
   801........810.........820.........830.........840.........850.........860.........870.........880
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Query Sequence  AYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLV
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Template Sequence  REFLVKL. . . . . . . . . . . . . . . . . . . . . . . PPLSDERRLELERLFASELKATVLASETVGPAIGEELRRNAVMAVLVGLG
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   523...... 530.........540.........550.........560.........570.........
 
   881........890.........900.........910.........920.........930.........940.........950... ......
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Query Sequence  VVFLALAALYESWSIPFSVMLVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQK. EGKTPI
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Template Sequence  LILLYVAFRF. DWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYA
Template Known Secondary structure  S.
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   580......... 590.........600.........610.........620.........630.........640.........650........
 
   960.........970.........980.........990.........1000.........1010.........1020.........1030
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Query Sequence  EAIIEAARMRLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFVVVEHL
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Template Sequence  ELVNRSINQTLSRTVMTSLTTLLPILALLFLGGS. . . VLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNR
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   659660.........670.........680.........690.. .......700.........710.........720......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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