Job Description Q1PI83 Confidence 96.82% Date Thu Jan 5 12:33:32 GMT 2012 Rank 70 Aligned Residues 121 % Identity 15% Template c2ccjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of s. aureus thymidylate kinase complexed2 with thymidine monophosphate Resolution 1.7 Å

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		1	.	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.										.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																																																			.	.	.	.	.	.	.	.	.
Query SS confidence									.	.																																																			.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	I	M	E	K	Y	.	.	G	I	P	Q	I	S	T	G	D	M	L	R	A	A	V	K	S	G	S	E	L	G	K	Q	A	K	D	I	M	D	A	G	K	L	V	T	D	E	L	V	I	A	L	V	K	E	R	I	A	Q	.	.	.	.	.	.	.	.	.	E	D	C	R	N	G	F	L	L	D	G	F
Query Conservation									.	.																																																			.	.	.	.	.	.	.	.	.
Alig confidence									.	.										.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		N	E	V	Y	H	R	L	V	K	D	Y	D	V	I	M	T	R	E	.	.	.	.	.	.	P	G	G	V	P	T	G	E	E	I	R	K	I	V	L	E	G	N	D	M	D	I	R	T	E	A	M	L	F	A	A	S	R	R	E	H	L	V	L	K	V	I	P	A	L	K	E	G	K	V	V	L	C	D	R	Y
Template Known Secondary structure									T	T	T	S							S	.	.	.	.	.	.	S	T	T													T		S	S																					T							T	T							S
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
																	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	T	I	P	Q	A	D	A	M	K	E	A	G	I	N	V	D	Y	V	L	E	F	D	V	P	D	E	L	I	V	D	R	I	V	G	R	R	V	H	A	P	S	G	R	V	Y	H	V	K	F	N	P	P	K	V	E	G	K	D	D	V	T	G	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	S	S	L	A	Y	Q	G	Y	A	R	G	I	G	V	E	E	V	R	A	L	N	E	F	A	I	N	G	L	Y	P	D	L	T	I	Y	L	N	V	S	A	E	V	G	R	E	R	I	I	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	T	T	T	S	S														T	T				S																			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	T	T	R	K	D	D	Q	E	E	T	V	R	K	R	L	V	E	Y	H	Q
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	S	N	R	L	D	Q	E	D	L	K	F	H	E	K	V	I	E	G	Y	Q	E
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions