Job Description Q1PI83 Confidence 97.52% Date Thu Jan 5 12:33:32 GMT 2012 Rank 49 Aligned Residues 126 % Identity 17% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	E	K	Y	G	I	P	Q	I	S	T	G	D	M	L	R	A	A	V	K	S	G	S	E	L	G	K	Q	A	K	D	I	M	D	A	G	K	L	V	T	D	E	L	V	I	A	L	V	K	E	R	I	A	Q	E	D	C	R	N	G	F	L	L	D	G	F	P	R	T	I	P	Q	A	D	A	M	K	E	A
Query Conservation
Alig confidence																	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	L	V	S	A	G	Y	V	H	V	N	R	D	T	L	.	.	.	.	.	G	S	W	Q	R	C	V	S	S	C	Q	A	A	L	R	Q	G	K	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	D	N	T	N	P	D	V	P	S	R	A	R	Y	I	Q	C
Template Known Secondary structure			T	G	G	G	T										.	.	.	.	.		S														T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S				S
Template Predicted Secondary structure																	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.						.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.																							.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
					83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.									.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.																																	.	.	.	.	.	.	.	.											.
Query SS confidence		.	.	.																																	.	.	.	.	.	.	.	.											.
Query Sequence		.	.	.	G	I	N	V	D	Y	V	L	E	F	D	V	P	D	E	L	I	V	D	R	I	V	G	R	R	V	H	A	P	S	G	R	.	.	.	.	.	.	.	.	V	Y	H	V	K	F	N	P	P	K	.	V	E	G	K	D	D	V	T	G	E	E	L	T	T	R	K	D	D	Q	E	E	T	V	R	K	R
Query Conservation		.	.	.																																	.	.	.	.	.	.	.	.											.
Alig confidence		.	.	.																																	.	.	.	.	.	.	.	.											.																						.
Template Conservation																																																																													.
Template Sequence		A	K	D	A	G	V	P	C	R	C	F	N	F	C	A	T	I	E	Q	A	R	H	N	N	R	F	R	E	X	T	D	P	S	H	A	P	V	S	D	X	V	X	F	S	Y	R	K	Q	F	E	P	P	T	L	A	E	G	F	L	E	I	L	E	I	P	F	R	L	Q	E	H	L	D	P	A	.	L	Q	R	L
Template Known Secondary structure						T																											T	T																					G	G	G	S		S											T	T					.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.
		151	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	Y	H	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	Q	F	S	E
Template Known Secondary structure			T	S
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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