Phyre 2 alignment of P04805 with c3kflA

Job Description P04805
Confidence 99.86% Date Thu Jan 5 10:58:21 GMT 2012

Rank 31 Aligned Residues 278

% Identity 14% Template c3kflA_

PDB info PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: leishmania major methionyl-trna synthetase in complex with2 methionyladenylate and pyrophosphate

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.														.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																								.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	.	.	.	.	.	N	H	G	G	E	F	V	L	R	I	E	D	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N	W	L	S	L	E	W	D	E
Query Conservation																								.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	Y	V	N	A	S	P	H	I	G	H	V	Y	S	T	L	I	V	D	V	L	G	R	Y	H	R	V	K	G	E	E	V	F	V	M	T	G	T	D	E	H	G	Q	K	V	A	E	A	A	A	K	Q	G	V	S	P	M	D	F	T	T	S	V	S	S	E	F	K	Q	C	F	Q	E	M	N	Y	D	M	N	Y
Template Known Secondary structure				S	S																								T													S										T	T																					T	T				S
Template Predicted Secondary structure
Template SS confidence
	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

	71	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure			.																										.	.	.	.	.	.
Query SS confidence			.																										.	.	.	.	.	.
Query Sequence	G	P	.	Y	Y	Q	T	K	R	F	D	R	Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	.	.	.	.	.	.	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	A	D	D	E	P	C	V	V	R	F	A
Query Conservation			.																										.	.	.	.	.	.
Alig confidence			.																										.	.	.	.	.	.
Template Conservation
Template Sequence	F	I	R	T	T	N	P	T	H	E	K	L	V	Q	D	I	W	K	K	L	A	A	K	G	D	I	Y	L	G	K	Y	E	G	W	Y	S	V	S	D	E	S	F	L	T	A	Q	N	V	A	D	G	V	D	R	D	G	K	P	C	K	V	S	L	E	S	G	H	V	V	T	W	V	E	E	E	N	Y	M	F	R
Template Known Secondary structure				T	T	S																		T													T	T	T	T					G	G	G							T	T	S							T	T	T	S		B
Template Predicted Secondary structure
Template SS confidence
	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

	144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.													.	.	.	.	.	170	.	.	.	.	.							.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	N	P	Q	E	G	S	V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	L	D	D	L	I	I	R	R	T	.	.	.	.	.	.	D	G	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	S	A	F	R	E	R	L	L	K	Y	F	H	D	H	P	N	C	I	V	P	E	F	R	R	R	E	V	I	K	T	V	E	K	G	L	F	D	L	S	I	S	R	K	R	E	S	V	M	N	W	S	I	P	V	P	G	D	E	R	H	C	I	Y	V	W	L	D	A	L	F	N	Y	Y	T	G	A	L	T	R
Template Known Secondary structure	G	G	G	G												T	T	S			S																								G	G	G	G	T	T		S				T	T														T
Template Predicted Secondary structure
Template SS confidence
	378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

														180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	N	F	C	V	V	V	D	D	W	D	M	E	I	T	H	V	I	R	G	E	D	H	I	N	N	T	P	R	Q	I	N	I	L	K	A	L	K	A	P	V	P	V	Y	A	H	V	S	M	I	N	G	D	D	G	K	K	L	S	K	R	H	G	A	V	S
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence	V	A	T	D	G	T	E	T	L	D	E	D	H	H	A	L	N	R	W	P	A	D	V	H	V	V	G	K	D	I	L	K	F	.	.	.	.	.	.	H	A	I	Y	W	P	A	F	L	M	S	A	E	L	P	L	P	E	R	L	V	S	H	G	W	W	T	K	D	H	K	K	I	S	K	S	L	G	N	A	F
Template Known Secondary structure			T	T	S						S	S	S	T	T	T	T			S		S						G	G	G				.	.	.	.	.	.			T									T	T					S											T	T					T	T	T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
	458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490							.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.

	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	D	Q	E	I	F	T	R	E	E	M	I	K	Y	F	T	L	N	A	V	S	K
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence	D	P	V	E	K	A	K	E	F	G	I	D	A	L	K	Y	F	L	M	R	E	S	.	N	F	Q	D	D	G	D	Y	S	D	K	N	M	V	A	R	L	N	G	E	L	A	D	T
Template Known Secondary structure																							.		S	S																	T	T	T	T	T
Template Predicted Secondary structure																							.
Template SS confidence
	532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.		.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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