Job Description P04805 Confidence 99.94% Date Thu Jan 5 10:58:21 GMT 2012 Rank 24 Aligned Residues 278 % Identity 16% Template c3fnrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of putative arginyl t-rna synthetase from2 campylobacter jejuni; Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.																.	.
Query SS confidence																															.	.	.	.	.																.	.
Query Sequence		I	K	T	R	F	A	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	.	.	.	.	.	N	H	G	G	E	F	V	L	R	I	E	D	T	D	L	.	.	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N	W	L	S	L	E	W	D	E	G	P	Y	Y	Q
Query Conservation																															.	.	.	.	.																.	.
Alig confidence																															.	.	.	.	.																.	.
Template Conservation
Template Sequence		L	L	E	Y	V	S	A	N	P	T	G	P	L	H	I	G	H	A	R	G	A	V	F	G	D	T	L	T	R	L	A	R	H	L	G	Y	K	F	N	T	E	Y	Y	V	N	D	A	G	N	Q	I	Y	L	L	G	L	S	I	L	L	S	V	K	E	S	I	L	H	E	N	V	E	Y	P	E	Q	Y	Y	K	G
Template Known Secondary structure										S	S	S	S		B	G	G	G																	T	T																															T	S								S	S				S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		T	K	R	F	D	R	Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	.	.	.	.	.	.	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	A	D	D	E	P	C	V	V	R	F	A	N	P	Q	E	G	S
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																																									.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.
Template Sequence		E	Y	I	V	D	L	A	K	E	A	F	E	K	F	G	K	E	F	F	S	E	E	N	I	P	S	L	A	D	W	A	K	D	K	M	L	V	L	I	K	Q	N	L	E	Q	A	K	I	K	I	D	S	Y	V	S	E	R	S	Y	Y	D	A	L	N	A	T	L	E	S	.	.	.	.	.	L	K	E	H	K	G
Template Known Secondary structure																	G	G	G		S	G	G	G																							T	T				S					G	G	G	G	S	T	T								.	.	.	.	.				T	T
Template Predicted Secondary structure																																																																							.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																		.	.	.																			.	.																									.
Query SS confidence																																		.	.	.																			.	.																									.
Query Sequence		V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	Y	.	.	.	N	F	C	V	V	V	D	D	W	D	M	E	I	T	H	V	I	R	.	.	G	E	D	H	I	N	N	T	P	R	Q	I	N	I	L	K	A	L	K	A	P	V	P	V	.
Query Conservation																																		.	.	.																			.	.																									.
Alig confidence																																		.	.	.																			.	.																									.
Template Conservation
Template Sequence		I	Y	E	Q	E	G	K	I	W	L	A	S	S	Q	K	G	D	E	K	D	R	V	I	I	R	E	D	G	R	G	T	Y	L	A	A	D	I	V	Y	H	K	D	K	M	S	R	G	Y	G	K	C	I	N	I	W	G	A	D	H	H	G	Y	I	P	R	M	K	A	A	M	E	F	L	G	F	D	S	N	N	L
Template Known Secondary structure						T	T						G	G	G	G	T		S	S							T	T	S		B															T	S	S		S								G	G	G	G	G	G										T	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
			224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Y	A	H	V	S	M	I	N	G	D	D	G	K	K	L	S	K	R	H	G	A	V	S	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	D	Q	E	I	F	T	R	E	E	M	I	K	Y	F	T
Query Conservation		.
Alig confidence		.																																										.	.
Template Conservation																																												.	.
Template Sequence		E	I	I	L	A	Q	M	V	S	L	L	K	D	G	E	P	Y	K	M	A	G	N	F	I	L	M	S	D	V	V	D	E	I	G	S	D	A	L	R	Y	I	F	.	.	L	S	K	K	C	D	T	H	L	E	F	D	I	S	D	L	Q	K	E	D	S
Template Known Secondary structure														T	T								S	S		B																	T	.	.	T	S	S		T	T	S						G	G	G	G	G			S	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions