Job Description P04805 Confidence 99.93% Date Thu Jan 5 10:58:21 GMT 2012 Rank 25 Aligned Residues 275 % Identity 13% Template c2x1lC_ PDB info PDB header:ligase Chain: C: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of mycobacterium smegmatis methionyl-trna2 synthetase in complex with methionine and adenosine Resolution 2.30 Å

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		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.														.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure										.																							.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																							.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	K	T	R	F	A	P	.	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	.	.	.	.	.	N	H	G	G	E	F	V	L	R	I	E	D	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N
Query Conservation										.																							.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																							.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	Y	I	T	T	A	I	A	Y	P	N	G	V	P	H	I	G	H	A	Y	E	Y	I	A	T	D	A	I	A	R	F	K	R	L	D	G	Y	D	V	R	Y	L	T	G	T	D	V	H	G	Q	K	M	A	E	T	A	A	K	E	G	I	P	A	A	E	L	A	R	R	N	S	D	V	F	Q	R	L	Q	E
Template Known Secondary structure										B			S	S																							T	T													S											T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure														.																								.	.	.	.	.	.	.	.
Query SS confidence														.																								.	.	.	.	.	.	.	.
Query Sequence		W	L	S	L	E	W	D	E	G	P	Y	Y	.	Q	T	K	R	F	D	R	Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	.	.	.	.	.	.	.	.	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	A
Query Conservation														.																								.	.	.	.	.	.	.	.
Alig confidence														.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	N	I	S	F	D	R	F	I	R	T	S	D	A	D	H	Y	E	A	S	K	A	I	W	K	R	M	A	D	A	G	D	I	Y	L	D	A	Y	T	E	E	Q	T	Y	F	F	R	L	S	A	Y	T	D	R	L	L	A	L	Y	E	E	H	P	E	F	I	G	P	D	A	R	R	N	E	I	V	S	F	V
Template Known Secondary structure			T	T				S					T	T	S																	T	T																	G	G	G	S												G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.												.															.
Query SS confidence																																																	.	.	.	.	.	.												.															.
Query Sequence		D	D	E	P	C	V	V	R	F	A	N	P	Q	E	G	S	V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	.	.	.	.	.	.	Y	N	F	C	V	V	V	D	D	W	D	.	M	E	I	T	H	V	I	R	G	E	D	H	I	N	.
Query Conservation																																																	.	.	.	.	.	.												.															.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.												.															.
Template Conservation																		.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	G	L	K	D	L	S	I	S	R	T	T	F	D	W	.	.	.	.	.	.	.	.	.	.	G	V	P	V	P	D	H	P	D	H	V	M	Y	V	W	V	D	A	L	T	N	Y	L	T	G	V	G	F	P	D	T	E	S	E	S	F	R	R	Y	W	P	A	D	L	H	M	I	G	K	D	I	I	R	F
Template Known Secondary structure		T	T										S	S				.	.	.	.	.	.	.	.	.	.	S				T	T														T					T	T	T	T	T		T	T	S								S		S						G	G	G
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.											.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	P	R	Q	I	N	I	L	K	A	L	K	A	P	V	P	V	Y	A	H	V	S	M	I	N	G	D	D	G	K	K	L	S	K	R	H	G	A	V	S	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	D	Q	E	I	F	T	R	E	E	M	I	K	Y
Query Conservation
Alig confidence																																																																	.
Template Conservation																																																																	.
Template Sequence		H	T	V	Y	W	P	A	F	L	M	S	A	G	L	P	L	P	K	R	I	F	A	H	G	W	L	L	N	R	G	E	K	M	S	K	S	I	G	N	V	V	D	P	V	N	L	V	D	T	F	G	L	D	Q	V	R	Y	F	L	L	R	E	V	.	P	F	G	Q	D	G	S	Y	N	E	D	A	I	I	G	R
Template Known Secondary structure				T										T					S												S		S			T	T	T			S	S																						S	.		T	T	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		286	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		349	350

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions