Job Description P04805 Confidence 100.00% Date Thu Jan 5 10:58:21 GMT 2012 Rank 6 Aligned Residues 450 % Identity 40% Template c2o5rA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase 1; PDBTitle: crystal structure of glutamyl-trna synthetase 1 (ec 6.1.1.17)2 (glutamate-trna ligase 1) (glurs 1) (tm1351) from thermotoga maritima3 at 2.5 a resolution Resolution 2.34 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.									.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.
Query Sequence		I	K	T	R	F	A	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	N	H	G	G	E	F	V	L	R	I	E	D	T	D	L	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N	W	L	S	L	E	W	D	E	G	P	.	.	.	.	.	.	.	.	Y	Y
Query Conservation																																																																								.	.	.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	V	R	F	A	P	S	P	T	G	F	L	H	V	G	G	A	R	T	A	L	F	N	F	L	F	A	R	K	E	K	G	K	F	I	L	R	I	E	D	T	D	L	E	R	S	E	R	E	Y	E	E	K	L	X	E	S	L	R	W	L	G	L	L	W	D	E	G	P	D	V	G	G	D	H	G	P	Y	R
Template Known Secondary structure												S			B																		T							B			S	S			S	G	G	G														T				S	B	B	T	T	T	B		T	T				B
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.									.	.	.	.	.
Query SS confidence																																																				.	.									.	.	.	.	.
Query Sequence		Q	T	K	R	F	D	R	Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	.	.	C	R	H	S	H	E	H	H	.	.	.	.	.	A	D	D	E	P	C	V	V	R	F	A	N	P	Q	E
Query Conservation																																																				.	.									.	.	.	.	.
Alig confidence																																																				.	.									.	.	.	.	.														.
Template Conservation																																																																																.
Template Sequence		Q	S	E	R	V	E	I	Y	R	E	H	A	E	R	L	V	K	E	G	K	A	Y	Y	V	Y	A	Y	P	E	E	I	E	E	X	R	E	K	L	L	S	E	G	K	A	P	H	Y	S	Q	E	X	F	E	K	F	D	T	P	E	R	R	R	E	Y	E	E	K	G	L	R	P	A	V	F	F	K	X	P	.	R
Template Known Secondary structure		G	G	G	G														T	T	S								S	T	T	T										T	T					B		G	G	G	G	T	T	T												T	T											.	S
Template Predicted Secondary structure																																																																																.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	Y	N	F	C	V	V	V	D	D	W	D	M	E	I	T	H	V	I	R	G	E	D	H	I	N	N	T	P	R	Q	I	N	I	L	K	A	L	K	A	P	V	P	V	Y	A	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	Y	V	L	N	D	V	V	K	G	E	V	V	F	K	T	G	A	I	G	D	F	V	I	X	R	S	N	G	L	P	T	Y	N	F	A	C	V	V	D	D	X	L	X	E	I	T	H	V	I	R	G	D	D	H	L	S	N	T	L	R	Q	L	A	L	Y	E	A	F	E	K	A	P	P	V	F	A	H	V
Template Known Secondary structure		S							T	T	T							T	T	S	S		B						T	T	S		B													T	T		S						G	G	G														T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		S	M	I	N	G	D	D	G	K	K	L	S	K	R	H	G	A	V	S	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	.	D	Q	E	I	F	T	R	E	E	M	I	K	Y	F	T	L	N	A	V	S	K	S	A	S	A	F	N	T	D	K	L	L	W	L
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		S	T	I	L	G	P	D	G	K	K	L	S	K	R	H	G	A	T	S	V	E	A	F	R	D	X	G	Y	L	P	E	A	L	V	N	Y	L	A	L	L	G	W	S	H	P	E	G	K	E	L	L	T	L	E	E	L	I	S	S	F	S	L	D	R	L	S	P	N	P	A	I	F	D	P	Q	K	L	K	W	X
Template Known Secondary structure							T	T	S	S	B			G	G	G	S			B								T												T	S	S	B			T	T																G	G	G	B		S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	H	Y	I	N	A	L	P	P	E	Y	V	A	T	H	L	Q	W	H	I	E	Q	E	N	I	D	T	R	N	G	P	Q	L	A	D	L	V	K	L	L	G	E	R	C	K	T	L	K	E	M	A	Q	S	C	R	Y	F	Y	E	D	F	A	E	F	D	A	D	A	A	K	K	H	L	R	P	V	A	R	Q
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		N	G	Y	Y	L	R	N	X	P	I	E	K	L	A	E	L	A	K	P	F	F	E	K	A	G	I	K	I	I	D	E	E	Y	F	K	K	V	L	E	I	T	K	E	R	V	E	V	L	S	E	F	P	E	E	S	R	F	F	F	E	D	P	A	P	V	.	.	.	.	.	.	.	E	I	P	E	E	X	K	E
Template Known Secondary structure									S																T	T																	T	T	T		S	S	G	G	G					S	G	G	G	T	S						.	.	.	.	.	.	.				G	G	G
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.								.	.	.	.	390	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	E	V	V	R	D	K	L	A	A	I	T	D	W	T	A	E	N	V	H	H	A	I	Q	A	T	A	D	E	L	E	V	G	M	G	K	V	G	M	P	L	R	V	A	V	T	G	A	G	Q	S	P	A	L	D	V	T	V	H	A	I	G	K	T	R	S	I	E	R	I	N	K	A	L
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		V	F	S	Q	L	K	E	E	L	Q	N	.	V	R	W	T	X	E	E	I	T	P	V	F	K	K	V	L	K	Q	H	G	V	K	P	K	E	F	Y	X	T	L	R	R	V	L	T	G	R	E	E	G	P	E	L	V	N	I	I	P	L	L	G	K	E	I	F	L	R	R	I	E	R	S	L
Template Known Secondary structure										T	T	T	.	S		S	S																T															T	S	S	S			S									S
Template Predicted Secondary structure													.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.