Job Description P04805 Confidence 100.00% Date Thu Jan 5 10:58:21 GMT 2012 Rank 3 Aligned Residues 457 % Identity 37% Template c2ja2A_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: mycobacterium tuberculosis glutamyl-trna synthetase Resolution 1.65 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.									.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.
Query Sequence		K	I	K	T	R	F	A	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	N	H	G	G	E	F	V	L	R	I	E	D	T	D	L	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N	W	L	S	L	E	W	D	E	G	.	.	.	.	.	.	.	.	P	Y
Query Conservation																																																																								.	.	.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	R	V	R	F	C	P	S	P	T	G	T	P	H	V	G	L	V	R	T	A	L	F	N	W	A	Y	A	R	H	T	G	G	T	F	V	F	R	I	E	D	T	D	A	Q	R	D	S	E	E	S	Y	L	A	L	L	D	A	L	R	W	L	G	L	D	W	D	E	G	P	E	V	G	G	P	Y	G	P	Y
Template Known Secondary structure											S	S	S	S		B																		T							B					T	T	T																	T				S	B	B	T	T	T	B		T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		Y	Q	T	K	R	F	D	R	Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	.	.	.	.	.	A	D	D	E	P	C	V	V	R	F	A	N	P	Q	E	G
Query Conservation																																																													.	.	.	.	.
Alig confidence																																							.																						.	.	.	.	.														.
Template Conservation																																							.																																								.
Template Sequence		R	Q	S	Q	R	A	E	I	Y	R	D	V	L	A	R	L	L	A	A	G	E	A	Y	H	A	F	S	T	P	E	E	V	E	A	R	H	V	.	A	A	G	R	N	P	K	L	G	Y	D	N	F	D	R	H	L	T	D	A	Q	R	A	A	Y	L	A	E	G	R	Q	P	V	V	R	L	R	M	P	.	D	D
Template Known Secondary structure		B	G	G	G															T	T	S																	.		T	T			T	T	S					G	G	G	G												T	T											.	S	S
Template Predicted Secondary structure																																							.																																								.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.						.	.	220	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.
Query Sequence		S	V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	Y	N	F	C	V	V	V	D	D	W	D	M	E	I	T	H	V	I	R	G	E	D	H	I	N	N	T	P	R	Q	I	N	I	L	K	A	L	.	.	.	.	.	K	A	P	V	P	V
Query Conservation																																																																							.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.
Template Conservation
Template Sequence		D	L	A	W	N	D	L	V	R	G	P	V	T	F	A	A	G	S	V	P	D	F	A	L	T	R	A	S	G	D	P	L	Y	T	L	V	N	P	C	D	D	A	L	M	K	I	T	H	V	L	R	G	E	D	L	L	P	S	T	P	R	Q	L	A	L	H	Q	A	L	I	R	I	G	V	A	E	R	I	P	K
Template Known Secondary structure								T	T	T							T	T		S				B	S	B		T	T	S		B													T	T								G	G	G	G	G	G														T	T	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		Y	A	H	V	S	M	I	N	G	D	D	G	K	K	L	S	K	R	H	G	A	V	S	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	.	D	Q	E	I	F	T	R	E	E	M	I	K	Y	F	T	L	N	A	V	S	K	S	A	S	A	F	N	T	D	K
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		F	A	H	L	P	T	V	L	G	E	G	T	K	K	L	S	K	R	D	P	Q	S	N	L	F	A	H	R	D	R	G	F	I	P	E	G	L	L	N	Y	L	A	L	L	G	W	S	I	A	D	D	H	D	L	F	G	L	D	E	M	V	A	A	F	D	V	A	D	V	N	S	S	P	A	R	F	D	Q	K	K
Template Known Secondary structure											S	S	S	S	B			T	T	S	G	G	G	B								T												T	S	S			S		S	S															G	G	G				S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		L	L	W	L	N	H	H	Y	I	N	A	L	P	P	E	Y	V	A	T	H	L	Q	W	H	I	E	Q	E	N	I	.	D	T	R	N	G	P	Q	L	A	D	L	V	K	L	L	G	E	R	C	K	T	L	K	E	M	A	Q	S	C	R	Y	F	Y	E	D	F	A	E	F	D	A	D	A	A	K	K	H	L	R
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		A	D	A	L	N	A	E	H	I	R	M	L	D	V	G	D	F	T	V	R	L	R	D	H	L	D	T	H	G	H	H	I	A	L	D	E	A	A	F	A	A	A	A	E	L	V	Q	T	R	I	V	V	L	G	D	A	W	E	L	L	K	F	F	N	D	D	Q	Y	V	I	D	P	K	A	A	A	K	E	L	G
Template Known Secondary structure													S																T	T				S	S													T	T	S		S	S	T	T							G	G	G	S	T	T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		P	V	A	R	Q	P	L	E	V	V	R	D	K	L	A	A	I	T	D	W	T	A	E	N	V	H	H	A	I	Q	A	.	T	A	D	E	L	E	V	G	M	G	K	V	G	M	P	L	R	V	A	V	T	G	A	G	Q	S	P	A	L	D	V	T	V	H	A	I	G	K	T	R	S	I	E	R	I	N	K	A
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		P	D	G	A	A	V	L	D	A	A	L	A	A	L	T	S	V	T	D	W	T	A	P	L	I	E	A	A	L	K	D	A	L	I	E	G	L	A	L	K	P	R	K	A	F	S	P	I	R	V	A	A	T	G	T	T	V	S	P	P	L	F	E	S	L	E	L	L	G	R	D	R	S	M	Q	R	L	R	A	A
Template Known Secondary structure																	T		S	S															T	T	T	T																	S	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.