Job Description P04805 Confidence 98.56% Date Thu Jan 5 10:58:21 GMT 2012 Rank 50 Aligned Residues 179 % Identity 19% Template c2el7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from thermus2 thermophilus Resolution 2.50 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure				.																															.																				.	.	.	.	.	.	.	.
Query SS confidence				.																															.																				.	.	.	.	.	.	.	.
Query Sequence		M	K	.	I	K	T	R	F	A	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	N	.	H	G	G	E	F	V	L	R	I	E	D	T	D	L	E	R	S	T	P	.	.	.	.	.	.	.	.	E	A	I	E	A	I	M	D	G	M	N	W	L	S	L	E	W	D	E
Query Conservation				.																															.																				.	.	.	.	.	.	.	.
Alig confidence				.									.	.																					.																				.	.	.	.	.	.	.	.
Template Conservation													.	.
Template Sequence		M	K	R	V	L	S	G	I	Q	P	S	.	.	G	E	I	H	I	G	N	Y	L	G	A	I	K	Q	W	V	A	I	G	E	K	L	G	R	D	A	F	F	C	I	V	D	Y	H	A	L	T	N	P	L	A	Y	D	P	S	T	L	A	Q	R	T	F	E	A	A	L	V	N	I	A	A	G	L	D	P	E	K
Template Known Secondary structure											S		.	.	S			B						T													G	G	G							G	G	G	G	G	G	S	T	T	T	S																				T			T	T	T
Template Predicted Secondary structure													.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
			71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	P	Y	Y	Q	T	K	R	F	D	R	Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	A	D	D	E	P	C	V	V	R	F	A	N	P	Q	E	G	S
Query Conservation		.
Alig confidence		.																		.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	L	F	V	Q	S	H	V	P	E	H	T	E	L	S	W	V	.	.	.	.	.	.	.	.	F	T	T	L	T	P	L	G	D	L	T	R	M	T	Q	F	K	D	K	A	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S					G	G	G	S	T									.	.	.	.	.	.	.	.				T	S							T	S							T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.									.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																								.	.	.	.																																		.	.	.	.	.
Query SS confidence																																								.	.	.	.																																		.	.	.	.	.
Query Sequence		V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	Y	N	F	C	V	V	V	.	.	.	.	D	D	W	D	M	E	I	T	H	V	I	R	G	E	D	H	I	N	N	T	P	R	Q	I	N	I	L	K	A	L	K	A	P	.	.	.	.	.
Query Conservation																																								.	.	.	.																																		.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	T	V	W	S	G	L	L	M	Y	P	V	L	Q	A	A	D	I	L	I	Y	K	A	D	T	V	P	V	G	E	D	Q	V	Q	H	I	E	L	T	R	E	I	A	R	R	F	N	H	L	F	G	E	T	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																				T	T								G	G	G																			S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																											119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
			221	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure		.							.	.	.											.
Query SS confidence		.							.	.	.											.
Query Sequence		.	V	P	V	Y	A	H	.	.	.	V	S	M	I	N	G	D	D	G	K	.	K	L	S	K	R	H	G	A	V	S
Query Conservation		.							.	.	.											.
Alig confidence		.							.	.	.											.
Template Conservation
Template Sequence		P	E	P	Q	A	L	L	N	P	E	A	P	R	V	P	G	I	D	G	K	A	K	M	S	K	S	L	G	N	T	I
Template Known Secondary structure										T	T	S				B		T	T	S	S	S	B			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions