Job Description P04805 Confidence 99.91% Date Thu Jan 5 10:58:21 GMT 2012 Rank 27 Aligned Residues 274 % Identity 16% Template c2ct8A_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue Resolution 2.70 Å

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		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.														.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure									.																								.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.																								.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	K	T	R	F	A	.	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	.	.	.	.	.	N	H	G	G	E	F	V	L	R	I	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	L	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N
Query Conservation									.																								.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																								.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	Y	V	T	T	P	I	Y	Y	V	N	D	V	P	H	L	G	H	A	Y	T	T	I	A	A	D	T	I	A	R	Y	Y	R	L	R	D	Y	D	V	F	F	L	T	G	T	D	E	H	G	L	K	I	Q	K	K	A	E	E	L	G	I	S	P	K	E	L	V	D	R	N	A	E	R	F	K	K	L	W	E
Template Known Secondary structure												S	S	S																							T	T													S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure													.																														.	.	.	.	.	.	.	.
Query SS confidence													.																														.	.	.	.	.	.	.	.
Query Sequence		W	L	S	L	E	W	D	E	G	P	Y	.	Y	Q	T	K	R	F	D	R	Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	Y	C	S	K	.	.	.	.	.	.	.	.	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	A
Query Conservation													.																														.	.	.	.	.	.	.	.
Alig confidence													.																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	K	I	E	Y	T	K	F	I	R	T	T	D	P	Y	H	V	K	F	V	Q	K	V	F	E	E	C	Y	K	R	G	D	I	Y	L	G	E	Y	E	K	E	P	S	Y	F	F	R	L	S	K	Y	Q	D	K	L	L	E	L	Y	E	K	N	P	E	F	I	Q	P	D	Y	R	R	N	E	I	I	S	F	V
Template Known Secondary structure			T	T				S					T	T	S																	T	T	S																G	G	G	S											S	G	G	G	B		S											T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.
Predicted Secondary structure																																																													.														.
Query SS confidence																																																													.														.
Query Sequence		D	D	E	P	C	V	V	R	F	A	N	P	Q	E	G	S	V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	Y	N	F	C	V	V	V	D	D	W	D	M	.	E	I	T	H	V	I	R	G	E	D	H	I	N	.	N	T	P	R	Q	I
Query Conservation																																																													.														.
Alig confidence																		.	.	.	.	.	.	.	.																																				.														.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		K	Q	G	L	K	D	L	S	V	T	R	P	R	S	R	V	.	.	.	.	.	.	.	.	K	W	G	I	P	V	P	F	D	P	E	H	T	I	Y	V	W	F	D	A	L	F	N	Y	I	S	A	L	E	D	K	V	E	I	Y	W	P	A	D	L	H	L	V	G	K	D	I	L	R	F	H	T	V	Y	W	P
Template Known Secondary structure		T	T											T	T	T		.	.	.	.	.	.	.	.		S	S		B		T	T		T	T											T					T	T	T	T							S		S						G	G	G						T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	L	K	A	L	K	A	P	V	P	V	Y	A	H	V	S	M	I	N	G	D	D	G	K	K	L	S	K	R	H	G	A	V	S	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	D	Q	E	I	F	T	R	E	E	M	I	K
Query Conservation
Alig confidence																																																											.
Template Conservation																																																											.
Template Sequence		A	F	L	M	S	L	G	Y	E	L	P	K	K	V	F	A	H	G	W	W	T	V	E	G	K	K	M	S	K	T	L	G	N	V	V	D	P	Y	E	V	V	Q	E	Y	G	L	D	E	V	R	Y	F	L	L	R	E	V	.	P	F	G	Q	D	G	D	F	S	K	K	A	I	L	N
Template Known Secondary structure								T					S										S	S	S	S				T	T	T	T																								S	S	.		T	T	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions