Job Description P04805 Confidence 100.00% Date Thu Jan 5 10:58:21 GMT 2012 Rank 1 Aligned Residues 468 % Identity 41% Template c2cfoA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: non-discriminating glutamyl-trna synthetase from2 thermosynechococcus elongatus in complex with glu Resolution 2.45 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	K	T	R	F	A	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	N	H	G	G	E	F	V	L	R	I	E	D	T	D	L	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N	W	L	S	L	E	W	D	E	G	P	Y	Y	Q	T	K	R	F	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	R	V	R	L	A	P	S	P	T	G	N	L	H	I	G	T	A	R	T	A	V	F	N	W	L	Y	A	R	H	R	G	G	K	F	I	L	R	I	E	D	T	D	R	E	R	S	R	P	E	Y	T	E	N	I	L	E	G	L	Q	W	L	G	L	T	W	D	E	G	P	Y	F	Q	S	D	R	L	D	L
Template Known Secondary structure											T	T	S			B																	T	T											S	S	S	S																T	T				S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	.	.	.	.	.	A	D	D	E	P	C	V	V	R	F	A	N	P	Q	E	G	S	V	V	F	D	D	Q	I
Query Conservation																																																					.	.	.	.	.
Alig confidence																																																					.	.	.	.	.
Template Conservation
Template Sequence		Y	R	Q	A	I	Q	T	L	L	D	K	G	L	A	Y	Y	C	Y	C	T	P	E	E	L	E	A	L	R	A	E	Q	K	A	K	G	Q	A	P	R	Y	D	N	R	H	R	H	L	T	P	E	E	Q	A	A	F	E	A	A	G	R	T	P	V	I	R	F	K	I	E	D	D	R	Q	I	E	W	Q	D	L	V
Template Known Secondary structure												T	T	S																						T			S	S				T	T	T	T												T	T											T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		157	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure													.										.	.	.	.	.
Query SS confidence													.										.	.	.	.	.
Query Sequence		R	G	P	I	E	F	S	N	Q	E	L	.	D	D	L	I	I	R	R	T	D	.	.	.	.	.	G	S	P	T	Y	N	F	C	V	V	V	D	D	W	D	M	E	I	T	H	V	I	R	G	E	D	H	I	N	N	T	P	R	Q	I	N	I	L	K	A	L	K	A	P	V	P	V	Y	A	H	V	S	M	I
Query Conservation													.										.	.	.	.	.
Alig confidence													.										.	.	.	.	.
Template Conservation
Template Sequence		R	G	R	V	S	W	Q	G	A	D	L	G	G	D	M	V	I	A	R	A	A	P	R	G	E	I	G	Y	P	L	Y	N	L	V	V	V	V	D	D	I	A	M	G	I	T	D	V	I	R	G	E	D	H	I	G	N	T	P	K	Q	I	L	L	Y	E	A	L	G	A	T	P	P	N	F	A	H	T	P	L	I
Template Known Secondary structure		T							G	G	G	G		S	S						S			T	T	S				B													T	T		S						G	G	G	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		N	G	D	D	G	K	K	L	S	K	R	H	G	A	V	S	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	D	.	.	Q	E	I	F	T	R	E	E	M	I	K	Y	F	T	L	N	A	V	S	K	S	A	S	A	F	N	T	D	K	L	L	W	L	N	H
Query Conservation																																													.	.
Alig confidence																																													.	.
Template Conservation
Template Sequence		L	N	S	T	G	Q	K	L	S	K	R	D	G	V	T	S	I	S	D	F	R	A	M	G	Y	L	A	P	A	L	A	N	Y	M	T	L	L	G	W	S	P	P	E	G	V	G	E	L	F	T	L	D	L	A	A	K	H	F	S	F	E	R	I	N	K	A	G	A	R	F	D	W	D	K	L	N	W	L	N	R
Template Known Secondary structure				S	S	S	S	B			T	T	S	S			B							T	T													T	T	B				T	T	T		S													S	T	T	B		S	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		H	Y	I	N	A	L	P	P	E	Y	V	A	T	H	L	Q	W	H	I	E	Q	E	N	I	D	T	R	.	.	.	N	G	P	Q	L	A	D	L	V	K	L	L	G	E	R	C	K	T	L	K	E	M	A	Q	S	C	R	Y	F	Y	E	D	F	A	E	F	D	A	D	A	A	K	K	H	L	R	P	V	A	R
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		Q	Y	I	Q	Q	L	E	P	E	E	F	L	A	E	L	I	P	L	W	Q	G	A	G	Y	A	F	D	E	E	R	D	R	P	W	L	F	D	L	A	Q	L	L	Q	P	G	L	N	T	L	R	E	A	I	D	Q	G	A	V	F	F	I	P	S	V	T	F	D	S	E	A	M	A	Q	L	G	Q	P	Q	S	A
Template Known Secondary structure					T	T	S																	T					T	T	T	T												G	G	G		S	S	G	G	G										S	S	S												T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		Q	P	L	E	V	V	R	D	K	L	A	A	I	T	D	W	T	A	E	N	V	H	H	A	I	Q	A	T	A	D	E	L	E	V	G	M	G	K	V	G	M	P	L	R	V	A	V	T	G	A	G	Q	S	P	A	L	D	V	T	V	H	A	I	G	K	T	R	S	.	I	E	R	I	N	K	A	L	D	F	I
Query Conservation																																																																						.
Alig confidence																																																																						.
Template Conservation
Template Sequence		T	I	L	A	Y	L	L	E	H	L	P	A	E	P	A	L	T	V	A	M	G	Q	Q	L	I	Q	Q	A	A	K	A	A	G	V	K	K	G	A	T	M	R	T	L	R	A	A	L	T	G	A	V	H	G	P	D	L	M	A	A	W	Q	I	L	H	Q	R	G	W	D	E	P	R	L	A	A	A	L	K	Q	A
Template Known Secondary structure													S	S	S																			T																S	S	S	S		S													T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		465	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	T	S	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.