Job Description P04805 Confidence 98.02% Date Thu Jan 5 10:58:21 GMT 2012 Rank 62 Aligned Residues 172 % Identity 20% Template c1yi8C_ PDB info PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl trrna synthetase ii from deinococcus2 radiodurans in complex with l-trp Resolution 2.10 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.			.	.	80	.
Predicted Secondary structure																																		.	.	.	.	.	.																													.								.	.
Query SS confidence																																		.	.	.	.	.	.																													.								.	.
Query Sequence		P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	N	H	G	G	E	F	V	L	R	I	E	.	.	.	.	.	.	D	T	D	L	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N	W	L	S	L	E	W	D	E	.	G	P	Y	Y	Q	T	K	.	.	R	F	D	R
Query Conservation																																		.	.	.	.	.	.																													.								.	.
Alig confidence																																		.	.	.	.	.	.																													.								.	.
Template Conservation
Template Sequence		P	T	G	A	L	H	L	G	H	L	A	G	S	L	Q	N	R	V	R	L	Q	D	E	A	E	L	F	V	L	L	A	D	V	Q	A	L	T	D	H	F	D	R	P	E	Q	V	R	E	N	V	L	A	V	A	L	D	Y	L	A	A	G	L	D	P	Q	K	T	T	C	V	V	Q	S	A	V	P	E	L	A	E
Template Known Secondary structure			S	S			B							T											S																T	T																				T			T	T	T						G	G	G		T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	A	D	D	E	P	C	V	V	R	F	A	N	P	Q	E	G	S	V	V	F	D	D	Q	I	R	G	P	I	E
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	V	Y	F	L	N	L	V	T	V	S	H	L	R	Q	N	P	T	V	K	A	E	I	A	Q	K	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S																			T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.									.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.																																.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.																																.	.	.	.	.	.	.	.
Query Sequence		F	S	N	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	Y	N	F	C	V	V	V	.	.	.	.	D	D	W	D	M	E	I	T	H	V	I	R	G	E	D	H	I	N	N	T	P	R	Q	I	N	I	L	K	A	L	K	.	.	.	.	.	.	.	.	A	P	V	P	V	Y	A	H	V	S	M
Query Conservation																												.	.	.	.																																.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	R	V	P	A	G	F	F	V	Y	P	V	S	Q	A	A	D	I	A	A	F	G	A	T	L	V	P	V	G	D	D	Q	L	P	M	L	E	Q	T	R	E	I	V	R	R	F	N	A	L	Y	A	P	V	L	A	E	P	Q	A	Q	L	S	R	V	P	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								T													T		S						T	T	T																		S		S		S										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		I	N	G	D	D	G	K	.	K	L	S	K	R	H	G	A	V	S
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		L	P	G	L	D	G	Q	A	K	M	S	K	S	L	G	N	A	I
Template Known Secondary structure					T	T	S		S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions