Job Description P04805 Confidence 99.92% Date Thu Jan 5 10:58:21 GMT 2012 Rank 26 Aligned Residues 264 % Identity 22% Template c1woyA_ PDB info PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of methionyl trna synthetase y225f mutant2 from thermus thermophilus Resolution 2.00 Å

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		1	.				.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.														.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.																														.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.																														.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	.	.	.	I	K	T	R	F	A	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	.	.	.	.	.	N	H	G	G	E	F	V	L	R	I	E	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	E	R	S	T	P	E	A	I	E	A	I	M	D
Query Conservation				.	.	.																														.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																														.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	K	V	F	Y	V	T	T	P	I	Y	Y	V	N	A	E	P	H	L	G	H	A	Y	T	T	V	V	A	D	F	L	A	R	W	H	R	L	D	G	Y	R	T	F	F	L	T	G	T	D	E	H	G	E	T	V	Y	R	A	A	Q	A	A	G	E	D	P	K	A	F	V	D	R	V	S	G	R	F	K	R
Template Known Secondary structure															T	T	S																							T	T													S										T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		G	M	N	W	L	S	L	E	W	D	E	G	P	Y	Y	Q	T	K	R	F	D	R	Y	.	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	A	D	D	E	P	C
Query Conservation																									.
Alig confidence																									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	W	D	L	L	G	I	A	Y	D	D	F	I	R	T	T	E	E	R	H	K	K	V	V	Q	L	V	L	K	K	V	Y	E	A	G	D	I	Y	Y	G	E	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	Y	C	V	S	C	E	R	F	Y	T	E	K	E	L	V	E	G	L
Template Known Secondary structure							T				S					T	T	S																	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	T					G	G	G	S	B	T	T	B
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																															.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	R	F	A	N	P	Q	E	G	S	V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	Y	N	F	C	V	V	V	D
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		C	.	.	.	.	P	I	H	G	R	P	V	E	R	R	K	E	G	N	Y	F	F	R	M	E	K	Y	R	P	W	L	Q	E	Y	I	Q	E	N	P	D	L	I	R	P	E	G	Y	R	N	E	V	L	A	M	L	A	E	P	I	G	D	L	S	I	S	R	P	K	S	R	V	P	W	G	I	P	L	P	W	D
Template Known Secondary structure			.	.	.	.	T	T	T		S	B														G	G	G												T	T	S			S											T	T	S											T	T	T			S	S				T	T
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		144					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
			189	190	.	.	.	.																											.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																		.
Query SS confidence		.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																		.
Query Sequence		.	D	W	D	M	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	V	I	R	G	E	D	H	I	N	.	N	T	P	R	Q	I	N	I	L	K	A	L	K	A	P	V	P	.	V	Y	A	H	V	S	M	I	N	G	D	D	G	K	K	L	S
Query Conservation		.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																		.
Alig confidence		.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																		.
Template Conservation
Template Sequence		E	N	H	V	T	F	V	W	F	D	A	L	L	N	Y	V	S	A	L	D	Y	P	E	G	E	A	Y	R	T	F	W	P	H	A	W	H	L	I	G	K	D	I	L	K	P	H	A	V	F	W	P	T	M	L	K	A	A	G	I	P	M	Y	R	H	L	N	V	G	G	F	L	L	G	P	D	G	R	K	M	S
Template Known Secondary structure								S					T	T					T	T	T	T	T	T								G	G	G							G	G	G						T										T					S											T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	H	G	A	V	S	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	D	Q	E	I	F	T	R	E	E	M	I	K	Y	F
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		K	T	L	G	N	V	V	D	P	F	A	L	L	E	K	Y	G	R	D	A	L	R	Y	Y	L	L	R	E	I	.	P	Y	G	Q	D	T	P	V	S	E	E	A	L	R	T	R	Y
Template Known Secondary structure		T	T	T	T																										.		T	T	S
Template Predicted Secondary structure																															.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions