Job Description P04805 Confidence 100.00% Date Thu Jan 5 10:58:21 GMT 2012 Rank 12 Aligned Residues 447 % Identity 14% Template c1irxA_ PDB info PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of class i lysyl-trna synthetase Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																	.	.	.	.	.																																									.	.	.	.
Query SS confidence																																	.	.	.	.	.																																									.	.	.	.
Query Sequence		K	I	K	T	R	F	A	P	S	P	T	G	Y	L	H	V	G	G	A	R	T	A	L	Y	S	W	L	F	A	R	N	.	.	.	.	.	H	G	G	E	F	V	L	R	I	E	D	T	D	L	E	R	S	T	P	E	A	I	E	A	I	M	D	G	M	N	W	L	S	L	E	W	D	E	G	P	.	.	.	.
Query Conservation																																	.	.	.	.	.																																									.	.	.	.
Alig confidence																																	.	.	.	.	.																												.	.												.	.	.	.
Template Conservation																																																																	.	.
Template Sequence		K	Y	V	V	E	S	G	I	T	P	S	G	Y	V	H	V	G	N	F	R	E	L	F	T	A	Y	I	V	G	H	A	L	R	D	K	G	Y	E	V	R	H	I	H	M	W	D	D	Y	D	R	F	R	K	V	P	R	N	V	P	Q	E	W	K	.	.	D	Y	L	G	M	P	I	S	E	V	P	D	P	W	G
Template Known Secondary structure												S	S																						T	T	T											T	T	S	B						S	S	S		G	G	G	G	.	.	G	G	T	T	S	B	G	G	G	S			T	T	S
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
									73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140
Predicted Secondary structure		.	.	.	.	.	.	.																																																													.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																													.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	Y	Y	Q	T	K	R	F	D	R	Y	N	A	V	I	D	Q	M	L	E	E	G	T	A	Y	K	C	Y	C	S	K	E	R	L	E	A	L	R	E	E	Q	M	A	K	G	E	K	P	R	Y	D	G	R	C	R	H	S	H	E	H	H	.	.	.	.	.	A	D	D	E	P	C	V	V
Query Conservation		.	.	.	.	.	.	.																																																													.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.															.																																														.	.	.	.	.
Template Conservation																							.
Template Sequence		C	H	E	S	Y	A	E	H	F	M	R	K	F	E	E	E	V	E	K	L	G	.	I	E	V	D	L	L	Y	A	S	E	L	Y	K	R	G	E	Y	S	E	E	I	R	L	A	F	E	K	R	D	K	I	M	E	I	L	N	K	Y	R	E	I	A	K	Q	P	P	L	P	E	N	W	W	P	A	M	V	Y	C
Template Known Secondary structure		S	S	S	S															T	T	T	.														T	T	T	T										T															T	T						T	T			S
Template Predicted Secondary structure																							.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.
Query Sequence		R	F	A	N	P	Q	E	G	S	V	V	F	D	D	Q	I	R	G	P	I	E	F	S	N	Q	E	L	D	D	L	I	I	R	R	T	D	G	S	P	T	Y	N	F	C	V	V	V	D	D	W	D	M	E	I	T	H	V	I	R	G	E	D	H	I	N	.	.	.	.	.	N	T	P	R	Q	I	N	I	L	K
Query Conservation																																																																			.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.							.
Template Conservation																																																																														.
Template Sequence		P	E	H	R	R	E	A	E	I	I	E	W	D	G	G	W	K	V	K	Y	K	C	P	E	G	H	E	G	W	V	D	I	R	S	G	N	V	K	L	R	W	R	V	D	W	P	M	R	W	S	H	F	G	V	D	F	E	P	A	G	K	D	H	L	V	A	G	S	S	Y	D	T	G	K	E	I	.	I	K	E
Template Known Secondary structure		T	T	T											S	S	S							S	S	S							T	T	S	S																	S				B									S	T	T	S									.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	K	A	P	V	P	V	Y	A	H	V	S	M	I	N	G	D	D	G	K	K	L	S	K	R	H	G	A	V	S	V	M	Q	Y	R	D	D	G	Y	L	P	E	A	L	L	N	Y	L	V	R	L	G	W	S	H	G	D	Q	E	I	F	T	R	E	E	M	I	K	Y	F	T	L	N	A	V	S	K	S	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.
Template Sequence		V	Y	G	K	E	A	P	L	S	L	M	Y	E	.	.	.	.	.	.	.	.	F	V	G	I	K	G	Q	N	V	I	L	L	S	D	L	Y	E	V	L	E	P	G	L	V	R	F	I	Y	A	R	H	R	P	N	K	E	I	K	I	D	L	G	L	G	I	L	N	L	Y	D	E	F	E	K	V	E	R	I	Y
Template Known Secondary structure									B						.	.	.	.	.	.	.	.					S												T	T	S											S	S		T	T	S							S	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.									270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.										.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.
Query Sequence		S	A	F	N	T	D	K	L	L	W	L	N	H	H	Y	I	N	A	L	P	P	E	Y	V	A	T	H	L	Q	W	H	I	E	Q	E	N	I	D	T	R	N	G	P	Q	L	A	D	L	V	K	.	.	.	.	.	.	.	.	.	L	L	G	E	R	C	K	T	L	K	E	M	A	Q	S	C	R	Y	F	Y	E
Query Conservation																																																				.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	V	E	G	E	E	L	R	R	T	Y	E	L	S	M	P	K	K	P	E	R	L	V	A	Q	A	P	F	R	F	L	A	V	L	V	Q	L	P	H	L	T	E	E	D	I	I	N	V	L	I	K	Q	G	H	I	P	R	D	L	S	K	E	D	V	E	R	V	K	L	R	I	N	L	A	R	N	W	V	K
Template Known Secondary structure		T	T	S														S	S																		T	T		T	T													T	T	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		367	.	.	370	.	.							.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence		D	F	A	E	F	D	.	.	.	.	.	.	A	D	A	A	K	K	H	L	R	P	V	A	R	Q	P	L	E	V	V	R	D	K	L	A	A	I	T	D	W	T	A	E	N	V	H	H	A	I	Q	A	T	A	D	E	L	E	V	G	M	G	K	V	G	M	P	L	R	V	A	V	T	G	A	G	Q	S	P	A
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.
Template Conservation
Template Sequence		K	Y	A	P	E	D	V	K	F	S	I	L	E	K	P	P	E	V	E	V	S	E	D	V	R	E	A	M	N	E	V	A	E	W	L	E	N	H	E	E	F	S	V	E	E	F	N	N	I	L	F	E	V	A	K	R	R	G	I	S	S	R	E	W	F	S	T	L	Y	R	L	F	I	G	K	E	R	G	P	R
Template Known Secondary structure			T	S		G	G	G						S	S																							S		S	S																		T																S	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	V	T	V	H	A	I	G	K	T	R	S	I	E	R	I	N	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	S	F	L	A	S	L	D	R	S	F	V	I	K	R	L	R	L	E
Template Known Secondary structure								T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.