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Job DescriptionP04805
Confidence100.00%DateThu Jan 5 10:58:21 GMT 2012
Rank11Aligned Residues280
% Identity23%Templatec1exdA_
PDB info PDB header:ligase/rnaChain: A: PDB Molecule:glutaminyl-trna synthetase; PDBTitle: crystal structure of a tight-binding glutamine trna bound2 to glutamine aminoacyl trna synthetase
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  KIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDTDLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDR
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Template Sequence  TVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQ
Template Known Secondary structure  S



SSS

BTT




TTT

TT


SSS
GGGG
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   26...30.........40.........50.........60.........70.........80.........90.........100.....
 
   82.......90.........100.........110.........120.... .....130.........140.........150...
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Query Sequence  YNAVIDQMLEEGTAYKCYCSKERLEALREEQMAKGEKPRYDGR. . . . . . . . CRHSHEHHADDEPCVVRFANPQEGSVVFD
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Template Sequence  LHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASP. . . .
Template Known Secondary structure  TTS


T

SSS




TTTT

T
S
TTS



TT
S....
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   106...110.........120.........130.........140.........150.........160.........170.........180.
 
   154.....160.........170........ .180.........190.........200.........210.........220.
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Query Sequence  DQIRGPIEFSNQELDDLIIRRTDGS. . . . . . . . . . . . PTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALKAPV
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Template Sequence  . . . . . . . . . . FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV
Template Known Secondary structure  ..........SGGGSS




BTTTBTS
S
T
SGGGTTTTS

S
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   182.......190.........200.........210.........220.........230.........240.........250.
 
   222.......230.........240.. .......250.........260.........270.........280.....
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Query Sequence  PVYAHVSMINGDDGKKLSKRH. . . . . . . . . . . . . . . . GAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFTREEMIKY
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Template Sequence  HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIG. . . . . . . . . . . . . . . . .
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BTT



TTSSSSTT
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   252.......260.........270.........280.........290.........300.........310....
 
   286...290.........300.........310.......
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Query Sequence  FTLNAVSKSASAFNTDKLLWLNHHYINALPPE
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Template Sequence  . . . . . VTKQDNTIEMASLESCIREDLNENAPR
Template Known Secondary structure  .....

SS


B


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   315....320.........330.........340.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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