Job Description P0ABC3 Confidence 98.76% Date Thu Jan 5 11:15:09 GMT 2012 Rank 4 Aligned Residues 260 % Identity 15% Template c2zv4O_ PDB info PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution Resolution 3.50 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																				.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	V	K	E	G	E	R	G	I	T	L	R	F	G	K	V	L	R	D	D	D	N	K	P	L	V	Y	E	P	G	L	H	F	K	I	P	F	I	E	T	V	K	M	L	D	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	T	M	D	N	Q	A	D	R	F	V	T
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																							.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation													.	.	.	.	.																							.																																			.	.
Template Sequence		Y	R	V	P	H	N	A	A	V	Q	V	.	.	.	.	.	Y	D	Y	R	A	K	R	A	R	V	V	F	G	P	E	L	V	T	L	D	P	E	.	E	Q	F	T	V	L	S	L	S	A	G	R	P	K	R	P	H	A	R	R	A	L	C	L	L	L	G	P	D	F	F	T	D	V	.	.	I	T	I	E	T
Template Known Secondary structure						T	T						.	.	.	.	.			T	T	T								T	T							T	T	.											S	S	S			T	T	S				S	S				S	S							.	.
Template Predicted Secondary structure													.	.	.	.	.																							.																																			.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470						.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.			.	.	.	530	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		K	E	K	K	D	L	I	V	D	S	Y	I	K	W	R	I	S	.	.	D	F	S	R	Y	Y	L	A	T	G	G	G	D	I	S	Q	A	E	V	L	L	K	R	K	F	S	D	R	L	R	S	E	I	G	R	L	D	V	K	D	I	V	T	D	S	R	G	R	L	T	L	E	V	R	D	A	L	N	S	G	S
Query Conservation																			.	.
Alig confidence																			.	.																																																							.
Template Conservation																																																																											.
Template Sequence		A	D	H	A	R	L	Q	L	Q	L	A	Y	N	W	H	F	E	L	K	N	R	N	D	P	A	E	A	A	K	L	F	S	V	P	D	F	V	G	D	A	C	K	A	I	A	S	R	V	R	G	A	V	A	S	V	T	F	D	D	F	H	K	N	S	A	R	I	I	R	M	A	V	F	.	G	F	E	K	A	R
Template Known Secondary structure		T	T																	S		S	S							G	G	G	S	S	T	T																		T	T	S																	S	S	.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.		.	.	.	.	.	610
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	T	E	D	E	V	T	T	P	A	A	D	N	A	I	A	E	A	A	E	R	V	T	A	E	T	K	G	K	V	P	V	I	N	P	N	S	M	A	A	L	G	I	E	V	V	D	V	R	I	K	Q	I	N	L	P	T	E	V	S	E	A	I	Y	N	R	M	R	A	E	R	E	A	V	A	R	R	H	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	A	V	F	P	Q	N	G	L	V	V	S	S	V	D	V	Q	S	V	E	P	V	D	Q	R	T	R	D	A	L	Q	R	S	V	Q	L	A	I	E	I	T	T	N	S	Q	E	A	A	A	K	H	E	A	Q	R	L	E	Q	E	A	R	G	R	L	E	R	Q	K	I	L	D	Q	S	E	A	E	K	A	R
Template Known Secondary structure		S					T	T	T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	G	Q	E	E	A	E	K	L	R	A	T	A	D	Y	E	V	T	R	T	L	A	E	A	E	R	Q	G	R	I	M	R	G	E	G	D	A	E	A	A	K	L	F	A	D	A	F	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	L	L	E	L	E	A	M	S	M	A	V	E	S	T	G	N	A	K	A	E	A	E	S	R	A	E	A	A	R	I	E	G	E	G	S	V	L	Q	A	K	L	K	A	Q	A	L	A	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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