Job Description P32136 Confidence 99.91% Date Thu Jan 5 11:49:21 GMT 2012 Rank 4 Aligned Residues 372 % Identity 10% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	Y	G	M	G	D	V	G	S	N	L	M	L	C	I	G	T	L	Y	L	L	K	F	Y	T	D	E	L	G	M	P	A	Y	Y	G	G	I	I	F	L	V	A	K	F	F	T	A	F	T	D	M	L	T	G	F	L	L	D	S	R	K	N	I	G	P	K	G	K	F	R	P	F	I	L	Y	A	A	V
Query Conservation
Alig confidence																									.																																							.	.	.	.	.	.	.
Template Conservation																									.																																							.	.	.	.	.	.	.
Template Sequence		L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	.	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	.	.	.	.	.	.	.	G	R	R	P	V	I	L	V	G	M	S
Template Known Secondary structure																									.				T	T	S	S	S	T	T																			T	T						T	T	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.																																							.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70								.	.	.	.	.	.	.	.	.	80	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	A	L	I	A	T	L	Q	F	I	A	T	T	F	C	L	P	V	K	T	T	I	A	T	A	L	F	M	M	F	G	L	S	Y	S	L	M	N	C	S	Y	G	A	M	I	P	A	I	T	K	N	P	N	E	R	A	Q	L	A	A	Y	R	Q	G	G	A	T	I	G	L	L	I	C	T	V	A	F	I	P
Query Conservation
Alig confidence																				.	.	.	.	.	.																												.
Template Conservation																				.	.	.	.	.	.																												.
Template Sequence		I	F	M	L	A	T	L	V	A	V	T	T	S	S	L	T	V	L	.	.	.	.	.	.	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	.	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L
Template Known Secondary structure																				.	.	.	.	.	.																												.	T	S	S			S
Template Predicted Secondary structure																				.	.	.	.	.	.																												.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	S	L	F	S	D	S	T	V	G	Y	A	C	A	A	L	M	F	S	I	G	G	F	I	F	M	M	L	C	Y	R	G	V	K	E	H	Y	V	D	T	T	P	T	G	H	K	A	S	I	L	K	S	F	C	A	I	F	R	N	P	P	L	L	V	L	C	I	A	N	L	C	T	L	A	A	F	N	I	K
Query Conservation
Alig confidence																															.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.
Template Sequence		L	D	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	.	.	.	.	.	.	.	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E
Template Known Secondary structure		S	S																										S	S	.	.	.	.	.	.	.				S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		L	A	I	Q	V	Y	Y	T	Q	Y	V	L	N	D	I	N	L	L	S	W	M	G	F	F	S	M	G	C	I	L	I	G	V	L	L	V	P	L	T	V	K	C	F	G	K	K	Q	V	Y	L	A	G	M	V	L	W	A	V	G	D	I	L	N	Y	F	W	.	.	G	S	N	S	F	T	F	V	M	F	S	C
Query Conservation																																																																				.	.
Alig confidence																																																																				.	.
Template Conservation
Template Sequence		A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A
Template Known Secondary structure					S		S	S																	T														T	T	T	T																T	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	F	F	G	T	A	F	V	N	S	L	N	W	A	L	V	P	D	T	V	D	Y	G	E	W	K	T	G	I	R	A	E	G	S	V	Y	T	G	Y	T	F	F	R	K	I	S	A	A	L	A	G	F	L	P	G	I	M	L	T	Q	I	G	Y	V	P	N	I	A	Q	S	D	A	T	L	Q	G	L	R	Q
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	F	.	.	.	.	.	.	.	.	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	S	S	T	T						T					.	.	.	.	.	.	.	.																					S	T	T		T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330									.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	F	I	W	P	C	A	L	A	I	I	A	A	L	T	M	G	F	F	Y	T	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V	L	C	W	L	P	L
Template Known Secondary structure		.	.																T
Template Predicted Secondary structure		.	.
Template SS confidence
				363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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