Job Description Q46817 Confidence 100.00% Date Thu Jan 5 12:34:42 GMT 2012 Rank 1 Aligned Residues 387 % Identity 13% Template c3qe7A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Resolution 2.78 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		N	Y	F	K	I	T	A	R	G	S	T	V	R	Q	E	V	L	A	G	L	T	T	F	L	A	M	V	Y	S	V	I	V	V	P	G	M	L	G	K	A	G	F	P	P	A	A	V	F	V	A	T	C	L	V	A	G	F	G	S	L	L	M	G	L	.	W	A	N	L	P	M	A	I	G	C	A	I	S	L	T
Query Conservation																																																																		.
Alig confidence										.																												.	.	.																						.	.	.		.
Template Conservation										.																												.	.	.																						.	.	.
Template Sequence		R	A	I	G	V	S	E	R	.	P	P	L	L	Q	T	I	P	L	S	L	Q	H	L	F	A	M	F	G	A	T	V	L	V	P	V	L	.	.	.	F	H	I	N	P	A	T	V	L	L	F	N	G	I	G	T	L	L	Y	L	F	.	.	.	I	C	K	G	K	I	P	A	Y	L	G	S	S	F	A	F	I
Template Known Secondary structure				B		T	T			.																											T	.	.	.	T	T	S																			.	.	.		T	T	T										G	G	G
Template Predicted Secondary structure										.																												.	.	.																						.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	T	A	F	S	L	V	L	G	Q	Q	I	S	V	P	V	A	L	G	A	V	F	L	M	G	V	I	F	T	A	I	S	V	T	G	V	R	T	W	I	L	R	N	L	P	M	G	I	A	H	G	T	G	I	G	I	G	L	F	L	L	L	I	A	A	N	G	V	G	M	V	I	K	N	P	I	E	G	L
Query Conservation
Alig confidence																																							.																																								.	.	.
Template Conservation																																							.																																								.	.	.
Template Sequence		S	P	V	L	L	L	L	P	L	G	Y	E	V	A	L	G	G	F	I	M	C	G	V	L	F	C	L	V	S	F	I	V	K	K	A	G	T	.	G	W	L	D	V	L	F	P	P	A	A	M	G	A	I	V	A	V	I	G	L	E	L	A	G	V	A	A	G	M	A	G	L	L	P	A	E	G	Q	.	.	.
Template Known Secondary structure								G	G	G																									T	T		S	.																																T	S	S		B	T	T	B	.	.	.
Template Predicted Secondary structure																																							.																																								.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	A	L	G	A	F	T	S	F	P	V	M	M	S	L	L	G	L	A	V	I	F	G	L	E	K	C	R	V	P	G	G	I	L	L	V	I	I	A	I	S	I	I	G	L	I	F	D	P	A	V	K	Y	H	G	L	V	A	M	P	S	L	T	G	E	D	G	K	S	L	I	F	S	L	D	I	M	G	A
Query Conservation
Alig confidence		.	.	.	.	.																																																													.	.	.	.	.
Template Conservation		.	.	.	.	.																																																													.	.	.	.	.
Template Sequence		.	.	.	.	.	T	P	D	S	K	T	I	I	I	S	I	T	T	L	A	V	T	V	L	G	S	V	L	F	R	G	F	L	A	I	I	P	I	L	I	G	V	L	V	G	Y	A	L	S	F	A	M	G	I	V	D	T	T	P	I	I	N	A	H	W	.	.	.	.	.	F	A	L	P	T	L	Y	T	P	R
Template Known Secondary structure		.	.	.	.	.																							S	S	S	T	T	T	T	T																				T	T	S	S					S		S	.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.																																																													.	.	.	.	.
Template SS confidence
							153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		L	Q	P	T	V	L	P	S	V	L	A	L	V	M	T	A	V	F	D	A	T	G	T	I	R	A	V	A	G	Q	A	N	L	L	D	K	D	N	Q	I	I	N	G	G	K	A	L	T	S	D	S	V	S	S	I	F	S	G	L	V	G	A	A	P	A	A	.	V	Y	I	E	S	A	A	G	T	A	A	G	G
Query Conservation																																																																				.
Alig confidence																																		.	.																																	.
Template Conservation																																		.	.
Template Sequence		F	E	W	F	A	I	L	T	I	L	P	A	A	L	V	V	I	A	E	H	V	G	H	L	V	V	T	A	N	I	V	K	.	.	K	D	L	L	R	D	P	G	L	H	R	S	M	F	A	N	G	L	S	T	V	I	S	G	F	F	G	S	T	P	N	T	T	Y	G	E	N	I	G	V	M	A	I	T	R	V
Template Known Secondary structure											T																						T	.	.	S		T																								T																		T	B
Template Predicted Secondary structure																																		.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.				.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.								.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																				.	.	.																					.	.	.	.	.	.	.																														.	.	.
Query SS confidence																				.	.	.																					.	.	.	.	.	.	.																														.	.	.
Query Sequence		K	T	G	L	T	A	T	V	V	G	A	L	F	L	L	I	L	F	.	.	.	L	S	P	L	S	F	L	I	P	G	Y	A	T	A	P	A	L	M	Y	V	.	.	.	.	.	.	.	G	L	L	M	L	S	N	V	S	K	L	D	F	N	D	F	I	D	A	M	A	G	L	V	C	A	V	F	I	.	.	.
Query Conservation																				.	.	.																					.	.	.	.	.	.	.																														.	.	.
Alig confidence																				.	.	.																					.	.	.	.	.	.	.																														.	.	.
Template Conservation
Template Sequence		Y	S	T	W	V	I	G	G	A	A	I	F	A	I	L	L	S	C	V	G	K	L	A	A	A	I	Q	M	I	P	L	P	V	M	G	G	V	S	L	L	L	Y	G	V	I	G	A	S	G	I	R	V	L	I	E	S	K	V	D	Y	N	K	A	Q	N	L	I	L	T	S	V	I	L	I	I	G	V	S	G	A
Template Known Secondary structure																		T										T	T	S																											T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
				405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	V	L	T	C	N	I	V	T	G	I	M	L	G	F	V	T	L	V	V	G	R	V	F	A	R
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		K	V	N	I	G	A	A	E	L	K	G	M	A	L	A	T	I	V	G	I	G	L	S	L	I	F	K
Template Known Secondary structure					S	S	S																					T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.