Return to main results Retrieve Phyre Job Id

Job DescriptionQ46817
Confidence16.47%DateThu Jan 5 12:34:42 GMT 2012
Rank4Aligned Residues15
% Identity47%Templatec3iysA_
PDB info PDB header:virusChain: A: PDB Molecule:major capsid protein vp1; PDBTitle: homology model of avian polyomavirus asymmetric unit
Resolution11.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30..
Predicted Secondary structure 






Query SS confidence 














Query Sequence  LDNYFKITARGSTVR
Query Conservation      
          
Alig confidence 














Template Conservation 




 
 



 

Template Sequence  LPRYFSIQLRKRNVR
Template Known Secondary structure 

Template Predicted Secondary structure 





Template SS confidence 














   273......280.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions