 |
Job Description | P60664 | Confidence | 86.65% | Date | Thu Jan 5 12:07:01 GMT 2012 |
Rank | 431 | Aligned Residues | 93 |
% Identity | 17% | Template | c3k13A_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; |
PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron
|
Resolution | 2.00 Å |
|
 |
  |   |
33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | |
|
. | . | . | . | . | 100 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | P | L | A | K | R | Y | A | E | E | G | A | D | E | L | V | F | Y | D | I | T | A | S | S | D | G | R | V | . |
. |
. |
. |
. |
. |
V | D | K | S | W | V | S | R | V | A | E | V | I | D | I | P | F | C | V | A | G | G | I | K | S | L | E | D | A | A | K | I | L | S | . |
. |
F | G | A | D | K | I | S | I | N | S |
Query Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|   |
|
|
|   |   |   |   |
|   |   | . | . | . | . | . | . |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|
|
|   |
|   |
|
|
|   |   |   |
|   | . | . |   |
|
|
|   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|
|   | . | . | . |
|
|
|
|
|   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |
|
|
|
|
| . | . |
|
|   |   |   |   |
|   |
|
|
|
|   |   |   |   |
|   |   |
|
|
|
|
|
|
Template Sequence |   |
L | S | I | A | R | Q | Q | V | E | D | G | A | L | . |
. |
. |
V | I | D | V | N | X | D | D | G | L | L | D | A | R | T | E | X | T | T | F | L | N | L | I | X | S | E | P | E | I | A | R | V | P | V | X | I | . |
. |
D | S | S | K | W | E | V | I | E | A | G | L | K | C | L | Q | G | K | S | I | V | N | S | I | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
| S | . | . | . |  |  |  |  |  |
|
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  | T | S |
|  |  |  | . | . |  |
| S |
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
381 | . | . | . | . | . | . | . | . | 390 | . | . | . | |
|
|
. | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | |
|
. | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . |
  |
  |   |
105 | . | |
|
. | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 |
Predicted Secondary structure |   |
 |  | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | A | . |
. |
L | A | D | P | T | L | I | T | R | L | A | D | R | F | G | V | Q | C | I | V | V | G | I | D |
Query Conservation |   |
  |   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
Alig confidence |   |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|
|
|   |
|
|   |
|   |   |
|
Template Sequence |   |
L | K | E | G | E | E | V | F | L | E | H | A | R | I | I | K | Q | Y | G | A | A | T | V | V | X | A | F | D |
Template Known Secondary structure |   |
S | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  | S |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
456 | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|