Job Description P60664 Confidence 99.49% Date Thu Jan 5 12:07:01 GMT 2012 Rank 37 Aligned Residues 201 % Identity 15% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		37	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure											.																																										.	.																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																																										.	.																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	Y	A	E	E	G	A	D	.	E	L	V	F	Y	D	I	T	A	S	S	D	G	R	V	V	D	K	S	W	V	S	R	V	A	E	V	I	D	I	P	F	C	V	A	G	G	I	K	S	L	.	.	E	D	A	A	K	I	L	S	F	G	A	D	K	I	S	I	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.																																										.	.																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																																										.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	V	R	Q	V	S	L	G	V	R	L	Y	T	E	X	T	V	D	Q	A	V	L	R	G	N	R	E	R	L	L	A	F	R	P	E	E	H	P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E
Template Known Secondary structure									S	S	S	B														S										G	G	G		S								S															T	T		S										S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
					103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																							.
Query SS confidence		.	.	.																							.
Query Sequence		.	.	.	N	S	P	A	L	A	D	P	T	L	I	T	R	L	A	D	R	F	G	V	Q	C	.	I	V	V	G	I	D	T	W	Y	D	A	E	T	G	K	Y	H	V	N	Q	Y	T	G	D	E	S	R	T	R	V	T	Q	W	E	T	L	D	W	V	Q	E	V	Q	K	R	G	A	G	E	I	V	L	N	M
Query Conservation		.	.	.																							.
Alig confidence		.	.	.																							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A
Template Known Secondary structure			T		G	G	G	G	G	G														T	T		S	S								S		B	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																	T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		179	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.										.
Query SS confidence											.	.	.	.	.	.	.	.										.
Query Sequence		M	N	Q	D	G	V	R	N	G	.	.	.	.	.	.	.	.	Y	D	L	E	Q	L	K	K	V	.	R	E	V	C	H	V	P	L	I	A	S	G	G	A	G	T	M	E	H	F	L	E	A	F	R	D	A	D	V	D	G	A	L	A	A	S	V	F	H	K	Q	I	I	N	I	G	E	L	K	A	Y	L	A
Query Conservation											.	.	.	.	.	.	.	.										.
Alig confidence											.	.	.	.	.	.	.	.										.																									.	.
Template Conservation																																																					.	.
Template Sequence		R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.	.	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P	F	V	L	E	E	A	D	R	R	V	F
Template Known Secondary structure		S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									.	.	T	T	S	S					S							G	G	G	G	T	T					T	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	G	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	P	R	R
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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