Job Description P60664 Confidence 86.26% Date Thu Jan 5 12:07:01 GMT 2012 Rank 435 Aligned Residues 193 % Identity 17% Template c2zyfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:homocitrate synthase; PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate Resolution 2.15 Å

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		1	.	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		M	L	A	K	R	I	I	P	C	L	D	.	.	V	R	D	G	Q	V	V	K	G	V	Q	F	R	N	H	E	I	I	G	D	I	V	P	L	A	K	R	Y	A	E	E	G	A	D	E	L	V	F	Y	D	I	T	A	S	S	D	G	R	V	V	D	K	S	W	V	S	R	V	A	E	V	I	D	I	P	F	C
Query Conservation													.	.
Alig confidence								.	.	.			.	.																			.	.	.	.																	.	.	.	.
Template Conservation								.	.	.																							.	.	.	.																	.	.	.	.
Template Sequence		M	R	E	W	K	I	.	.	.	I	D	S	T	L	R	E	G	E	Q	F	E	K	A	N	F	S	T	Q	D	K	V	.	.	.	.	E	I	A	K	A	L	D	E	F	G	I	E	Y	I	E	V	.	.	.	.	T	T	P	V	A	S	P	Q	S	R	K	D	A	E	V	L	A	S	L	G	L	K	A	K	V
Template Known Secondary structure								.	.	.						T	G	G	G	G	S	T	T										.	.	.	.										T		S					.	.	.	.			G	G	G														S			S	S
Template Predicted Secondary structure								.	.	.																							.	.	.	.																	.	.	.	.
Template SS confidence
		1	.	.	.	.	.				.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.										.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.
Query Sequence		V	A	G	G	I	K	S	L	E	D	A	A	K	I	L	S	F	G	A	D	K	I	S	I	N	S	P	A	.	.	.	.	.	.	.	.	.	L	A	D	P	T	L	I	T	R	L	A	D	R	F	G	V	Q	C	I	V	V	G	I	D	T	W	Y	D	A	E	T	G	K	Y	H	V	N	Q	Y	T	G	D	E
Query Conservation																														.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.																		.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	H	I	Q	C	R	L	D	A	A	K	V	A	V	E	T	G	V	Q	G	I	D	L	L	F	G	T	S	K	G	R	D	I	P	R	I	I	E	E	A	K	E	V	I	A	Y	I	R	E	A	A	P	H	.	V	E	V	R	F	S	A	E	D	T	F	R	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S											T	T		S								S																									T	T	.	S							S	S	T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																										.	.												.	.									.	.	.	.
Query SS confidence																																										.	.												.	.									.	.	.	.
Query Sequence		S	R	T	R	V	T	Q	W	E	T	L	D	W	V	Q	E	V	Q	K	R	G	A	G	E	I	V	L	N	M	M	N	Q	D	G	V	R	N	G	Y	D	.	.	L	E	Q	L	K	K	V	R	E	V	C	.	.	H	V	P	L	I	A	S	G	.	.	.	.	G	A	G	T	M	E	H	F	L	E	A	F	R
Query Conservation																																										.	.												.	.									.	.	.	.
Alig confidence		.	.	.	.	.	.																														.	.	.			.	.												.	.									.	.	.	.									.				.
Template Conservation		.	.	.	.	.	.																														.	.	.																																						.				.
Template Sequence		.	.	.	.	.	.	E	E	Q	D	L	L	A	V	Y	E	A	V	A	P	Y	V	D	R	V	G	L	A	D	T	V	G	V	A	T	.	.	.	P	R	Q	V	Y	A	L	V	R	E	V	R	R	V	V	G	P	R	V	D	I	E	F	H	G	H	N	D	T	G	C	A	I	A	N	A	Y	.	E	A	I	.
Template Known Secondary structure		.	.	.	.	.	.													G	G	G		S							T	T	S				.	.	.																T	T	T	S							B		T	T	S								.				.
Template Predicted Secondary structure		.	.	.	.	.	.																														.	.	.																																						.				.
Template SS confidence
								143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.
		222	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	D	V	D	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	G	A	T	H	V
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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