|   |
36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
80 | . | . | . | |
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . |
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | R | Y | A | E | E | G | A | D | E | L | V | F | Y | D | I | T | A | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
S | D | G | R | V | V | D | K | S | W | V | S | R | V | A | E | V | I | D | I | P | F | C | V | . |
. |
. |
. |
. |
. |
A | G | G | I | . |
K | S | L | E | D | A | A | K | I | L | S | F | G | A | D | K |
Query Conservation |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|   |
|
|
|   |   | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|   |   | . | . | . | . | . | . |   |
|
|
| . |   |
|   |
|
|
|   |   |   |
|   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |
|
|
|   |
|
|   |   |
|   |   |   |   |
|   |
|
|
|   |
|
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|   |
|   |
|
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|   |
|
Template Sequence |   |
A | R | L | L | E | A | A | G | F | T | A | I | G | T | T | S | A | G | I | A | H | A | R | G | R | T | D | G | Q | T | L | T | R | D | E | M | G | R | E | V | E | A | I | V | R | A | V | A | I | P | V | N | A | D | I | E | A | G | Y | G | H | A | P | E | D | V | R | R | T | V | E | H | F | A | A | L | G | V | A | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T |
| S |
|  |  |  |
|  |  |  |  |  |  |  | S |
|
|
| S | S | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |
| T | T |
| S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |
  |   |
100 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | |
. | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | S | I | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | P | A | L | A | D | P | T | L | I | T | R | L | A | D | R | F | G | V | Q | C | I | V | V | G | . |
I | D | T | W | Y | D | A | E | T | G | K | Y | H | V | N | Q | Y | T | G | D | E | S | R | T | R | V | T | Q | W | E | T | L | D | W | V | Q | E |
Query Conservation |   |
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
| . |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|   |
|
Template Sequence |   |
V | N | L | E | D | A | T | G | L | T | P | T | E | L | Y | D | L | D | S | Q | L | R | R | I | E | A | A | R | A | A | I | D | A | S | G | V | P | V | F | L | N | A | R | T | D | T | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | K | G | H | G | A | T | D | E | E | R | L | A | E | T | V | R | R | G | Q | A |
Template Known Secondary structure |   |
 |  |  |  |
| B |
| S | S | S | S | S |
| B |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|  |  |  |  |  |
|
| T | T | . | . | . | . | . | . | . | . | . | . | . | . | T | T | T |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
  |
  |   |
166 | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | Q | K | R | G | A | G | E | I | V | L | N | M | M | N | Q | D | G | V | R | N | G | Y | D | L | E | Q | L | K | K | V | R | E | V | C | H | V | P | L | I | A | S | G | G | A | G | T | M | E | H | F | L | E | A | F | R | D | A | D | V | D | G | A | L | A | A | S | V | F | H | K |
Query Conservation |   |
  |   |   |   |
|   |   |   |
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |
|
|
|   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |
|   |
|
|
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|   |
|
|
|
|   |   | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
| . | . |   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
Y | A | D | A | G | A | D | G | I | F | V | P | L | A | . |
. |
. |
. |
. |
. |
. |
. |
L | Q | S | Q | D | I | R | A | L | A | D | A | L | R | V | P | L | N | V | M | A | F | P | G | S | P | V | . |
. |
P | R | A | L | L | D | A | G | A | A | R | V | S | F | G | Q | S | L | M | L |
Template Known Secondary structure |   |
 |  |  | T | T |
| S |  |  |  |
| T | T |
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |
|
| T | T | S |
|
| . | . |  |  |  |  |  |  | T | T |
| S |  |  |  |
| T | T |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
| . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | |
|
. | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . |
  |