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Job DescriptionP60664
Confidence85.98%DateThu Jan 5 12:07:01 GMT 2012
Rank437Aligned Residues144
% Identity15%Templatec2v3cC_
PDB info PDB header:signaling proteinChain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.........70.........80..... ....90.........100......
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Query Sequence  VPLAKRYAEEGADELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKS. . . . . LEDAAKILSFGADKISINSPA.
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Template Sequence  AKLARYIQKRGLKPA. LIAAD. . . TYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK. KADVLIIDTAGR
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   118.120.........130.. ..... ..140.........150.........160.........170.........180 .........190..
 
   107..110.........120. ........130.........140.........150.........160......... 170.........180
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Query Sequence  . LADPTLITRLADRFG. . . VQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETLDWVQEVQKR. . GAGEIVLNMMN
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Template Sequence  HKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ. . . . . . . . . . . . . . . . . . . . . . QAGIQAKAFKEAVGEIGSIIVTKLD
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SSTTSSS

SGGGGG......................GTTS
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   193......200.........210.........220..... ....230.........240.........250
 
   181........190.........200........
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Query Sequence  QDGVRNGYDLEQLKKVREVCHVPLIASG
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Template Sequence  GSAK. . . . . GGGALSAVAETKAPIKFIG
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   251... .....260.........270...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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