Job Description P60664 Confidence 98.58% Date Thu Jan 5 12:07:01 GMT 2012 Rank 126 Aligned Residues 158 % Identity 17% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		62	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.														.	.	110	.	.	.	.	.	.	.	.	.	120		.
Predicted Secondary structure														.																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence														.																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		D	K	S	W	V	S	R	V	A	E	V	I	.	D	I	P	F	C	V	A	G	G	I	K	S	L	E	D	.	.	.	.	.	A	A	K	I	L	S	F	G	A	D	K	I	S	I	N	S	P	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	P	T	L	I	T	R	L	A	D	R	F	.	G
Query Conservation														.																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence														.																.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		W	C	Q	S	V	T	E	L	K	A	D	F	P	D	N	I	V	I	A	S	I	M	C	S	Y	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R	W	V	R	Q
Template Known Secondary structure														T	T	S										S															T	T		S										S	S	G	G	G	G	T		T
Template Predicted Secondary structure
Template SS confidence
		621	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	C	I	V	V	G	I	D	T	W	Y	D	A	E	T	G	K	Y	H	V	N	Q	Y	T	G	D	E	S	R	T	R	V	T	Q	W	E	T	L	D	W	V	Q	E	V	Q	K	R	G	A	G	E	I	V	L	N	M	M	N	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	Q	I	P	F	F	A	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	N	V	T	D	I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	G	K	R
Template Known Secondary structure				S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S		S	S													T		S														B		T	T	S		B	S	S		B	T	T	T	T	B
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		701	.	.	.	.	.	.	.	.	710																						.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
					183	.	.	.	.	.	.						190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.	.	.								.	.	.	.	.												.
Query SS confidence		.	.	.								.	.	.	.	.												.
Query Sequence		.	.	.	G	V	R	N	G	Y	D	.	.	.	.	.	L	E	Q	L	K	K	V	R	E	V	C	.	H	V	P	L	I	A	S	G	G	A	G	T	M	E	H	F	L	E	A	F	R	D	A	D	V	D	G	A	L	A	A	S	V	F	H	K	Q	I	I	N	I
Query Conservation		.	.	.								.	.	.	.	.												.
Alig confidence		.	.	.								.	.	.	.	.												.																					.
Template Conservation																																																	.
Template Sequence		T	T	Y	G	G	V	S	G	T	A	I	R	P	I	A	L	R	A	V	T	T	I	A	R	A	L	P	G	F	P	I	L	A	T	G	G	I	D	S	A	E	S	G	L	Q	F	L	.	H	S	G	A	S	V	L	Q	V	C	S	A	V	Q	N	Q	D	F	T	V
Template Known Secondary structure									S	G	G	G															S	T	T							S	S			S									.		T	T		S					S					T	S		T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.		.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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