Job Description P31470 Confidence 100.00% Date Thu Jan 5 11:47:59 GMT 2012 Rank 20 Aligned Residues 215 % Identity 11% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

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		2	.	.	.	.	.	.	.								10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.
Query Sequence		K	L	I	I	T	E	D	Y	.	.	.	.	.	.	.	Q	E	M	S	R	V	A	A	H	H	L	L	G	Y	M	S	K	T	R	R	V	N	L	A	I	T	A	G	S	T	P	K	G	M	Y	E	Y	L	T	T	L	V	K	G	K	P	W	Y	D	N	C	Y	F	Y	N	F	D	E	I	P	F	R	G	K	E
Query Conservation										.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																				.	.																		.	.	.	.	.																			.
Template Conservation																																				.	.																		.	.	.	.	.																			.
Template Sequence		R	A	L	I	S	L	D	Q	P	N	T	N	E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	.	.	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	.	.	.	.	.	G	I	V	T	Q	R	N	A	R	F	V	S	A	I	G	G	T	H	.	I	I	N
Template Known Secondary structure										S	S																						T	T		.	.							S											.	.	.	.	.													S	B		B			.
Template Predicted Secondary structure																																				.	.																		.	.	.	.	.																			.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		G	E	G	V	T	I	T	N	L	R	N	L	F	F	T	P	A	G	I	K	E	E	N	I	Q	K	L	T	I	D	N	Y	.	.	.	.	.	R	E	H	D	Q	K	L	A	R	E	G	G	L	D	L	V	V	L	G	L	G	A	D	G	H	F	C	G	N	L	P	N	T	T	H	F	H	E	Q	T	V	E	F
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.
Template Conservation
Template Sequence		A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A	L	V	G	I	G	D	X	D	E	N	S	H	X	V	K	L	G	F	F	T	P	K	E	F	V	E	A
Template Known Secondary structure														T								S	B	S	B		S	S									T	S												T		S													T					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure														.											.	.	.	.
Query SS confidence														.											.	.	.	.
Query Sequence		P	I	Q	G	E	M	V	D	I	V	A	H	.	G	E	L	G	G	D	F	S	L	V	.	.	.	.	P	D	S	Y	V	T	M	G	P	K	S	I	M	A	A	K	N	L	L	I	I	V	S	G	A	G	K	A	Q	A	L	K	N	V	L	Q	G	P	V	T	E	D	V	P	A	S	V	L	Q	L	H	P	S
Query Conservation														.											.	.	.	.
Alig confidence														.											.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	N	D	G	I	V	G	D	I	G	G	F	D	F	F	K	L	D	G	T	D	A	D	T	L	X	R	G	R	V	I	G	L	E	X	E	D	L	R	Q	I	P	N	V	V	A	X	A	S	E	S	R	K	A	L	S	I	X	G	A	L	R	T	G	V	I	D	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T							T	T	T					T	T	S		B				G	G	G	G	G	B		B								T	S	S									G	G	G										T	S			S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	V	I	A	D	K	A	A	A	A	E	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	V	L	A	T	S	V	S	C	A	X	A	L
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			245	.	.	.	.	250	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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