Job Description P55135 Confidence 99.14% Date Thu Jan 5 12:06:06 GMT 2012 Rank 136 Aligned Residues 159 % Identity 14% Template c3opnA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hemolysin; PDBTitle: the crystal structure of a putative hemolysin from lactococcus lactis Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		V	N	Q	K	M	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	.	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T
Query Conservation																																									.
Alig confidence																																									.																				.	.	.	.	.
Template Conservation																																																													.	.	.	.	.
Template Sequence		G	G	L	K	L	E	K	A	L	K	E	F	H	L	E	I	N	G	K	T	C	L	D	I	G	S	S	T	G	G	F	T	D	V	X	L	Q	N	G	A	K	L	V	Y	A	L	D	V	G	T	N	Q	L	A	W	K	I	R	S	.	.	.	.	.	D	E	R	V	V	V	X	E	Q	F	N	F	R	N	A	V
Template Known Secondary structure		T											T	T				T	T							T		T	T	S									T	T		S							S	S										T	.	.	.	.	.		T	T						S			G	G	G
Template Predicted Secondary structure																																																													.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.																						.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																																	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	M	Q	Q	I	I	K	L	.	E	P	I	R	I	V	Y	V	S	C	N	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	A	R	D	S	E	A	L	L	K	A	G	Y
Query Conservation																																	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	D	F	E	Q	G	R	P	S	F	T	S	I	D	V	S	F	I	S	L	D	L	I	L	P	P	L	Y	E	I	L	E	K	N	G	E	V	A	A	L	I	K	P	Q	F	E	A	G	R	E	Q	V	G	N	G	I	I	R	D	P	K	V	H	Q	X	T	I	E	K	V	L	K	T	A	T	Q	L	G	F
Template Known Secondary structure		G	G	G			S				S							S	S	S		G	G	G	T								S		T	T													S																															T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	R	L	A	M	L	D	M	F	P	H	T	G	H	L	E	S	M	V	L	F	S	R	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	K	G	L	T	F	S	P	I	K	G	G	A	G	N	V	E	F	L	V	H	L	L	K	D	G
Template Known Secondary structure										S	S		B	T	T	T	B										S	S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions