Job Description P55135 Confidence 99.40% Date Thu Jan 5 12:06:06 GMT 2012 Rank 82 Aligned Residues 152 % Identity 25% Template c3m6wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine Resolution 1.30 Å

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		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	.	.	.	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.																													.														.	.
Template Conservation																																																																		.														.	.
Template Sequence		Q	A	V	G	V	L	L	D	P	K	P	G	E	R	V	L	D	L	A	A	A	P	G	G	K	T	T	H	L	A	A	R	M	G	G	K	G	L	L	L	A	N	E	V	D	G	K	R	V	R	G	L	L	E	N	V	E	R	W	G	A	P	L	A	.	V	T	Q	A	P	P	R	A	L	A	E	A	F	.	.
Template Known Secondary structure												T	T						S	S		T	T											T	T	T		S							S																					.				S										.	.
Template Predicted Secondary structure																																																																		.														.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.																										.	.	.	.	.	.	.	.		380	.		.	.	.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.			.									.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.			.									.	.
Query Sequence		A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	M	Q	Q	I	I	K	L	.	E	P	.	I	R	I	V	Y	V	S	C	.	.	N	P	A	T	L	A	R	D	S	E	A	L	L	K
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.			.									.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.			.									.	.
Template Conservation		.
Template Sequence		.	G	T	Y	F	H	R	V	L	L	D	A	P	C	S	G	E	G	M	F	R	K	D	R	E	A	A	R	H	W	G	P	S	A	P	K	R	M	A	E	V	Q	K	A	L	L	A	Q	A	S	R	L	L	G	P	G	G	V	L	V	Y	S	T	C	T	F	A	P	E	E	N	E	G	V	V	A	H	F	L	K
Template Known Secondary structure		.		S														G	G	G	T	T	T		T	T	S	G	G	G			T	T																		T	T												S				G	G	G	T
Template Predicted Secondary structure		.
Template SS confidence
			168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		404			.	.	.	.	.	410	.	.	.																						.	.	.	.	.	.	420	.	.	.	.	.			.	.	.	.	430	.
Predicted Secondary structure			.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence			.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		A	.	.	G	Y	T	I	A	R	L	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	M	F	P	H	T	G	H	L	E	S	.	.	M	V	L	F	S	R
Query Conservation			.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence			.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		A	H	P	E	F	R	L	E	D	A	R	L	H	P	L	F	A	P	G	V	P	E	W	G	E	G	N	P	E	L	L	K	T	A	R	L	W	P	H	R	L	E	G	E	G	H	F	L	A	R	F	R	K
Template Known Secondary structure				T	T									S	T	T	S					G	G	G	T	T	T		G	G	G	G	G	S					T	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions