Return to main results Retrieve Phyre Job Id

Job DescriptionP55135
Confidence46.01%DateThu Jan 5 12:06:06 GMT 2012
Rank497Aligned Residues76
% Identity13%Templatec3f6cB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   310.........320.........330.........340.........350.........360......... 370 .........380.......
Predicted Secondary structure 





















..



Query SS confidence 



























































.
.
















Query Sequence  SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA. A. GVMQQIIKLEPIRIVYV
Query Conservation   
 


    

  
  
   


 

     
    
          
 






 

. .     
       



Alig confidence 























.
















..















.
.
















Template Conservation 






       
   
   
 . 

        
     ..    
 

 
  
    
               

 
Template Sequence  NAIIIDDHPLAIAAIRNLLIKNDI. EILAELTEGGSAVQRVE. . TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII
Template Known Secondary structure 


TT.SSSTT..

STT
SSS
TT

S
Template Predicted Secondary structure 





.

..



















Template SS confidence 















































































   2.......10.........20..... ....30.........40.. .......50.........60.........70........
 
   388
Predicted Secondary structure 
Query SS confidence 
Query Sequence  S
Query Conservation 
Alig confidence 
Template Conservation   
Template Sequence  V
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   79
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions