Job Description P55135 Confidence 99.41% Date Thu Jan 5 12:06:06 GMT 2012 Rank 76 Aligned Residues 156 % Identity 15% Template c3eeyJ_ PDB info PDB header:transferase Chain: J: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum Resolution 2.20 Å

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		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																								.	.	.																											.
Query SS confidence																																								.	.	.																											.
Query Sequence		V	N	Q	K	M	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	.	.	.	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	.	Q	N	V	T	F	Y	H	E	N	L	E	E
Query Conservation																																								.	.	.																											.
Alig confidence																.	.																							.	.	.																											.
Template Conservation																.	.
Template Sequence		S	L	G	Q	S	H	D	Y	I	K	M	F	V	K	.	.	E	G	D	T	V	V	D	A	T	C	G	N	G	N	D	T	A	F	L	A	S	L	V	G	E	N	G	R	V	F	G	F	D	I	Q	D	K	A	I	A	N	T	T	K	K	L	T	D	L	N	L	I	D	R	V	T	L	I	K	D	G	H	Q	N
Template Known Secondary structure																.	.	T	T						S			T	T	S												T	T								S															T	T		G	G	G						S		G	G	G
Template Predicted Secondary structure																.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.													.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.										.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.														.													.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.														.													.	.	.	.	.	.	.	.	.
Query Sequence		D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	.	.	.	.	.	.	.	.	.	.	.	.	A	G	A	A	G	V	M	Q	Q	I	I	K	L	.	E	P	I	R	I	V	Y	V	S	C	N	P	.	.	.	.	.	.	.	.	.	A	T	L	A	R	D	S	E	A	L	L	K
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.														.													.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.														.	.	.	.	.	.	.	.	.	.	.	.														.													.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.
Template Sequence		M	D	K	Y	I	.	.	.	D	C	P	V	K	A	V	M	F	N	L	G	Y	L	P	S	G	D	H	S	I	S	T	R	P	E	T	T	I	Q	A	L	S	K	A	M	E	L	L	V	T	G	G	I	I	T	V	V	I	Y	Y	G	G	D	T	G	F	E	E	K	E	K	V	L	E	F	L	K	G	V	D	Q
Template Known Secondary structure		G	G	G	T		.	.	.		S										S			T	T	S		S	S																																	S	S	S														T	S		T
Template Predicted Secondary structure							.	.	.
Template SS confidence
		84	.	.	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	Y	T	I	A	R	L	A	M	L	D	M	F	P	H	T	G	H	L	E	S	M	V	L	F	S	R	V	K
Query Conservation
Alig confidence									.	.	.
Template Conservation									.	.	.
Template Sequence		K	K	F	I	V	Q	R	.	.	.	T	D	F	I	N	Q	A	N	C	P	P	I	L	V	C	I	E	K	I	S
Template Known Secondary structure		T	T						.	.	.				T	T			S												S
Template Predicted Secondary structure									.	.	.
Template SS confidence
		161	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions