Job Description P55135 Confidence 99.94% Date Thu Jan 5 12:06:06 GMT 2012 Rank 9 Aligned Residues 312 % Identity 20% Template c3dmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase; PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy Resolution 1.55 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																			.																																																	.	.
Query SS confidence																			.																																																	.	.
Query Sequence		I	P	G	L	L	P	Q	E	N	A	E	V	T	V	T	E	D	.	K	K	Q	Y	A	R	A	K	V	V	R	R	L	S	D	S	P	E	R	E	T	P	R	C	P	H	F	G	V	C	G	G	C	Q	Q	Q	H	A	S	V	D	L	Q	Q	R	S	K	S	.	.	A	A	L	A	R	L	M	K	H	D	V	S
Query Conservation																			.																																																	.	.
Alig confidence																			.																																																	.	.
Template Conservation
Template Sequence		T	P	L	P	H	P	G	G	R	L	F	I	K	P	G	A	R	G	Y	R	D	P	V	H	D	L	L	Q	K	T	V	E	P	F	G	E	R	A	L	D	L	N	P	G	V	G	W	G	S	L	P	L	E	G	R	M	A	V	E	R	L	E	T	S	R	A	A	F	R	C	L	T	A	S	G	L	Q	A	R	L
Template Known Secondary structure							T	T							T	T		S	S	S	S									T	T					S	S					S	S		T	T	S	T	T	T	G	G	G	B	T	T	B								B										T	T
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		E	V	I	A	D	V	P	W	G	Y	R	R	R	A	R	L	S	L	N	Y	L	P	K	T	Q	Q	L	Q	M	G	F	R	K	A	G	S	S	D	I	V	D	V	K	Q	C	P	I	L	A	.	.	.	.	P	Q	L	E	A	L	L	P	K	V	R	A	C	L	G	S	L	Q	A	M	R	H	L	G	H	V	E
Query Conservation																																																			.	.	.	.
Alig confidence																					.	.																													.	.	.	.
Template Conservation																					.	.
Template Sequence		A	L	P	W	E	A	A	A	G	A	Y	D	L	V	V	L	A	L	P	.	.	A	G	R	G	T	A	Y	V	Q	A	S	L	V	A	A	A	R	A	L	R	M	G	G	R	L	Y	L	A	G	D	K	N	K	G	F	E	R	Y	F	K	E	A	R	A	L	L	G	Y	G	V	V	V	R	R	E	G	P	Y	R
Template Known Secondary structure				G	G	G	S		T	T											.	.	G	G	G																												G	G	G	T													S									T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		L	V	Q	A	T	S	G	T	L	M	I	L	R	H	T	A	P	L	S	S	A	D	R	E	K	L	E	R	F	S	H	S	E	G	L	D	L	Y	L	A	P	D	S	E	I	L	E	T	V	S	G	E	M	P	W	Y	D	S	N	G	L	R	L	T	F	S	P	R	D	F	I	Q	V	N	A	.	G	V	N	Q
Query Conservation																																																																													.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	L	L	E	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	A	P	P	L	P	S	L	W	R	A	F	S	A	R	I	L	G	A	E	Y	T	F	H	H	L	P	G	V	F	S	A	G	K	V	D	P	A	S	L
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																	T	T									T	T		T	T	T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.																																	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		K	M	V	A	R	A	L	E	W	L	D	V	Q	.	.	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q
Query Conservation															.	.
Alig confidence															.	.																																																	.											.	.	.	.
Template Conservation																																																																	.											.	.	.	.
Template Sequence		L	L	L	E	A	L	Q	E	R	L	G	P	E	G	V	R	G	R	Q	V	L	D	L	G	A	G	Y	G	A	L	T	L	P	L	A	R	M	G	A	E	V	V	G	V	E	D	D	L	A	S	V	L	S	L	Q	K	G	L	E	A	N	A	L	.	K	A	Q	A	L	H	S	D	V	D	.	.	.	.	E	A
Template Known Secondary structure													T	T	T	T	T	T							T		T	T	S	T	T							T	T								S	B														T	T		.								S	T	T	.	.	.	.	T	T
Template Predicted Secondary structure																																																																	.											.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290					.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.									.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.															.
Query SS confidence																	.	.	.	.	.	.	.	.															.
Query Sequence		P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	.	.	.	.	.	.	.	.	R	A	G	A	A	G	V	M	Q	Q	I	I	K	L	.	E	P	I	R	I	V	Y	V	S	C	N	P
Query Conservation																	.	.	.	.	.	.	.	.															.
Alig confidence																	.	.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		L	T	E	E	A	R	F	D	I	I	V	T	N	P	P	F	H	V	G	G	A	V	I	L	D	V	A	Q	A	F	V	N	V	A	A	A	R	L	R	P	G	G	V	F	F	L	V	S	N	P
Template Known Secondary structure		S		T	T														T	T		S	S																												T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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