Job Description P55135 Confidence 46.98% Date Thu Jan 5 12:06:06 GMT 2012 Rank 491 Aligned Residues 91 % Identity 11% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																		.																			.	.												.
Query SS confidence																							.	.	.																		.																			.	.												.
Query Sequence		M	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V	.	.	.	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	.	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	.	.	A	K	N	G	F	D	K	V	L	L	D	.	P	A	R	A	G	A
Query Conservation																							.	.	.																		.																			.	.												.
Alig confidence																							.	.	.																		.																			.	.												.
Template Conservation
Template Sequence		V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E
Template Known Secondary structure											T	T	T											S	S	T											G	G	G	T							T	T																		T	T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
			370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.	.	.
Predicted Secondary structure		.										.	.	.	.
Query SS confidence		.										.	.	.	.
Query Sequence		.	A	G	V	M	Q	Q	I	I	K	.	.	.	.	L	E	P	I	R	I	V	Y	V
Query Conservation		.										.	.	.	.
Alig confidence		.										.	.	.	.
Template Conservation
Template Sequence		D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V
Template Known Secondary structure																			S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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