Job Description P55135 Confidence 99.65% Date Thu Jan 5 12:06:06 GMT 2012 Rank 40 Aligned Residues 144 % Identity 16% Template c3axtA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine Resolution 2.49 Å

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		248	.	250	.	.	.	.	.	.	.	.										.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.							.	.	.	.																																														.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.							.	.	.	.																																														.	.	.
Query Sequence		W	Y	D	S	N	G	L	R	L	T	F	.	.	.	.	.	.	.	.	.	S	P	R	D	F	I	.	.	.	.	Q	V	N	A	G	V	N	Q	K	M	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	A	.	.	.	S	V
Query Conservation													.	.	.	.	.	.	.	.	.							.	.	.	.																																														.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.							.	.	.	.																				.	.																									.	.	.
Template Conservation																																																			.	.
Template Sequence		I	V	Q	E	G	I	A	K	I	I	V	P	E	I	P	K	T	V	S	S	D	M	P	V	F	Y	N	P	R	M	R	V	N	R	D	L	A	V	L	G	L	E	Y	L	C	K	K	L	G	.	.	R	P	V	K	V	A	D	P	L	S	A	S	G	I	R	A	I	R	F	L	L	E	T	S	C	V	E	K	A
Template Known Secondary structure						T	T										S	S			T	T			S	S			G	G	G																				.	.	S							S	S		T	T	T											S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	.	.	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	M	Q	Q	I	I	K	L	E	P	I	R	I	V	Y	V	S	C
Query Conservation																										.	.
Alig confidence																										.	.																	.	.
Template Conservation																																												.	.
Template Sequence		Y	A	N	D	I	S	S	K	A	I	E	I	M	K	E	N	F	K	L	N	N	I	P	E	D	R	Y	E	I	H	G	M	E	A	N	F	F	L	R	K	E	W	.	.	G	F	G	F	D	Y	V	D	L	D	P	F	G	T	P	V	P	F	I	E	S	V	A	L	S	M	K	R	G	G	I	L	S	L	T	A
Template Known Secondary structure						S															T	T			G	G	G						S							T	S			.	.	S	S										S	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
			390	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	P	A	T	L	A
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		T	D	T	A	P	L	S
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions